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Retinol-binding protein type 1 expression predicts poor prognosis in head and neck squamous cell carcinoma

Head and neck squamous cell carcinoma (HNSCC) is the sixth most prevalent malignancy worldwide, with high incidence and poor survival rates. RBP1 is highly expressed in several kinds of cancer and plays a potential prognostic factor. However, the relationship between RBP1 and HNSCC were analyzed bas...

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Published in:BMC cancer 2024-10, Vol.24 (1), p.1277-13, Article 1277
Main Authors: Fu, Ling-Ling, Yan, Ming, Yu, Xin, Shao, Min, Gosau, Martin, Friedrich, Reinhard E, Vollkommer, Tobias, Smeets, Ralf, Feng, Hong-Chao, Xu, Liya
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container_title BMC cancer
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creator Fu, Ling-Ling
Yan, Ming
Yu, Xin
Shao, Min
Gosau, Martin
Friedrich, Reinhard E
Vollkommer, Tobias
Smeets, Ralf
Feng, Hong-Chao
Xu, Liya
description Head and neck squamous cell carcinoma (HNSCC) is the sixth most prevalent malignancy worldwide, with high incidence and poor survival rates. RBP1 is highly expressed in several kinds of cancer and plays a potential prognostic factor. However, the relationship between RBP1 and HNSCC were analyzed based on The Cancer Genome Atlas (TCGA) database. RBP1 expression and clinical information were obtained from the Cancer Genome Atlas (TCGA) database. Tumor tissue and adjacent normal tissue of 6 HNSCC patients were collected to analyze the RBP1 mRNA expression level by quantitative PCR. Cox regression analysis was used to evaluate the prognostic values of RBP1 and clinical data in HNSCC. A nomogram was also established to predict the impact of RBP1 on prognosis based on Cox multivariate results. The methylation level of RBP1 in HNSC and its prognosis were analyzed in UALACN and MethSurv. Finally, the potential biological functions of RBP1 were investigated using gene set enrichment analysis (GSEA) and single sample GSEA (ssGSEA). The mRNA expression levels of RBP1 were highly expressed in HNSCC tissue. The Cox analyses demonstrate that highly-expressed RBP1 is an independent prognosis marker(P 
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RBP1 is highly expressed in several kinds of cancer and plays a potential prognostic factor. However, the relationship between RBP1 and HNSCC were analyzed based on The Cancer Genome Atlas (TCGA) database. RBP1 expression and clinical information were obtained from the Cancer Genome Atlas (TCGA) database. Tumor tissue and adjacent normal tissue of 6 HNSCC patients were collected to analyze the RBP1 mRNA expression level by quantitative PCR. Cox regression analysis was used to evaluate the prognostic values of RBP1 and clinical data in HNSCC. A nomogram was also established to predict the impact of RBP1 on prognosis based on Cox multivariate results. The methylation level of RBP1 in HNSC and its prognosis were analyzed in UALACN and MethSurv. Finally, the potential biological functions of RBP1 were investigated using gene set enrichment analysis (GSEA) and single sample GSEA (ssGSEA). The mRNA expression levels of RBP1 were highly expressed in HNSCC tissue. The Cox analyses demonstrate that highly-expressed RBP1 is an independent prognosis marker(P &lt; 0.05). ROC curve analysis showed that performances of RBP1 (area under the ROC curve: 0.887, sensitivity: 84.1%, specificity: 79.9%). The methylation was increased in HNSCC patients compared with normal subjects(P &lt; 0.05) and was associated with better prognosis at sites cg06208339, cg12298268, cg12497564, cg15288618, cg20532370, cg23448348. Additionally, RBP1 expression is mildly associated with immune cell infiltration and immunological checkpoints. 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The Author(s).</rights><rights>COPYRIGHT 2024 BioMed Central Ltd.</rights><rights>2024. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>The Author(s) 2024 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c510t-f0a16535aa60d6b2ba43fdf5245446ea185b2a1f834cb1fe23b7f07c1911343b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11476480/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/3126414895?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39407127$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fu, Ling-Ling</creatorcontrib><creatorcontrib>Yan, Ming</creatorcontrib><creatorcontrib>Yu, Xin</creatorcontrib><creatorcontrib>Shao, Min</creatorcontrib><creatorcontrib>Gosau, Martin</creatorcontrib><creatorcontrib>Friedrich, Reinhard E</creatorcontrib><creatorcontrib>Vollkommer, Tobias</creatorcontrib><creatorcontrib>Smeets, Ralf</creatorcontrib><creatorcontrib>Feng, Hong-Chao</creatorcontrib><creatorcontrib>Xu, Liya</creatorcontrib><title>Retinol-binding protein type 1 expression predicts poor prognosis in head and neck squamous cell carcinoma</title><title>BMC cancer</title><addtitle>BMC Cancer</addtitle><description>Head and neck squamous cell carcinoma (HNSCC) is the sixth most prevalent malignancy worldwide, with high incidence and poor survival rates. RBP1 is highly expressed in several kinds of cancer and plays a potential prognostic factor. However, the relationship between RBP1 and HNSCC were analyzed based on The Cancer Genome Atlas (TCGA) database. RBP1 expression and clinical information were obtained from the Cancer Genome Atlas (TCGA) database. Tumor tissue and adjacent normal tissue of 6 HNSCC patients were collected to analyze the RBP1 mRNA expression level by quantitative PCR. Cox regression analysis was used to evaluate the prognostic values of RBP1 and clinical data in HNSCC. A nomogram was also established to predict the impact of RBP1 on prognosis based on Cox multivariate results. The methylation level of RBP1 in HNSC and its prognosis were analyzed in UALACN and MethSurv. Finally, the potential biological functions of RBP1 were investigated using gene set enrichment analysis (GSEA) and single sample GSEA (ssGSEA). The mRNA expression levels of RBP1 were highly expressed in HNSCC tissue. The Cox analyses demonstrate that highly-expressed RBP1 is an independent prognosis marker(P &lt; 0.05). ROC curve analysis showed that performances of RBP1 (area under the ROC curve: 0.887, sensitivity: 84.1%, specificity: 79.9%). The methylation was increased in HNSCC patients compared with normal subjects(P &lt; 0.05) and was associated with better prognosis at sites cg06208339, cg12298268, cg12497564, cg15288618, cg20532370, cg23448348. Additionally, RBP1 expression is mildly associated with immune cell infiltration and immunological checkpoints. 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RBP1 is highly expressed in several kinds of cancer and plays a potential prognostic factor. However, the relationship between RBP1 and HNSCC were analyzed based on The Cancer Genome Atlas (TCGA) database. RBP1 expression and clinical information were obtained from the Cancer Genome Atlas (TCGA) database. Tumor tissue and adjacent normal tissue of 6 HNSCC patients were collected to analyze the RBP1 mRNA expression level by quantitative PCR. Cox regression analysis was used to evaluate the prognostic values of RBP1 and clinical data in HNSCC. A nomogram was also established to predict the impact of RBP1 on prognosis based on Cox multivariate results. The methylation level of RBP1 in HNSC and its prognosis were analyzed in UALACN and MethSurv. Finally, the potential biological functions of RBP1 were investigated using gene set enrichment analysis (GSEA) and single sample GSEA (ssGSEA). The mRNA expression levels of RBP1 were highly expressed in HNSCC tissue. The Cox analyses demonstrate that highly-expressed RBP1 is an independent prognosis marker(P &lt; 0.05). ROC curve analysis showed that performances of RBP1 (area under the ROC curve: 0.887, sensitivity: 84.1%, specificity: 79.9%). The methylation was increased in HNSCC patients compared with normal subjects(P &lt; 0.05) and was associated with better prognosis at sites cg06208339, cg12298268, cg12497564, cg15288618, cg20532370, cg23448348. Additionally, RBP1 expression is mildly associated with immune cell infiltration and immunological checkpoints. RBP1 is overexpressed and associated with poor patient prognosis in head and neck squamous cell carcinoma.</abstract><cop>England</cop><pub>BioMed Central Ltd</pub><pmid>39407127</pmid><doi>10.1186/s12885-024-12565-3</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record>
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1471-2407
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subjects Aged
Analysis
B cells
Bioinformatic analysis
Biomarkers, Tumor - genetics
Biomarkers, Tumor - metabolism
Cancer
Cancer therapies
Care and treatment
Cell survival
Demographic aspects
Diagnosis
DNA Methylation
Female
Gene expression
Gene Expression Regulation, Neoplastic
Gene set enrichment analysis
Genetic aspects
Genomes
Genomics
Head and neck cancer
Head and neck carcinoma
Head and Neck Neoplasms - genetics
Head and Neck Neoplasms - metabolism
Head and Neck Neoplasms - mortality
Head and Neck Neoplasms - pathology
Head and neck squamous cell carcinoma
Health aspects
Humans
Lymphocytes
Male
Malignancy
Mann-Whitney U test
Medical prognosis
Metastases
Metastasis
Methylation
Middle Aged
Nomograms
Prognosis
Prognosis biomarker
Protein binding
Proteins
RBP1
Retinoids
Retinol-binding protein
Retinol-Binding Proteins, Cellular
Retinol-Binding Proteins, Plasma - genetics
Retinol-Binding Proteins, Plasma - metabolism
RNA
RNA, Messenger - genetics
RNA, Messenger - metabolism
Software
Squamous cell carcinoma
Squamous Cell Carcinoma of Head and Neck - genetics
Squamous Cell Carcinoma of Head and Neck - metabolism
Squamous Cell Carcinoma of Head and Neck - mortality
Squamous Cell Carcinoma of Head and Neck - pathology
Survival analysis
Tumors
Vitamin A
title Retinol-binding protein type 1 expression predicts poor prognosis in head and neck squamous cell carcinoma
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