ANAgdb: a multi-omics and taxonomy database for ANA-grade

The ANA-grade, encompassing early-diverging angiosperm lineages, Amborellales, Nymphaeales, and Austrobaileyales, represents a fundamental phase in the evolutionary history of flowering plants. Since the completion of key assembly of the Amborella genome, the continuous influx of omics data from the...

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Bibliographic Details
Published in:BMC plant biology 2024-09, Vol.24 (1), p.882-9, Article 882
Main Authors: Guo, Zhonglong, Luo, Shaoxuan, Wang, Qi, Yang, Yixiang, Bai, Yawen, Wei, Junrong, Wang, Dong, Duan, Yifan, Yang, Xiaozeng, Yang, Yong
Format: Article
Language:English
Subjects:
ANA-grade
Angiosperms
Botanical research
Botany
Data analysis
Databases, Genetic
Datasets
Evolution
Evolutionary genetics
Flowering
Flowering plants
Genes
Genetic analysis
Genetic diversity
Genome, Plant
Genomes
Genomic analysis
Genomics
Identification and classification
Keywords
Linux
Magnoliopsida - classification
Magnoliopsida - genetics
MicroRNAs
MicroRNAs - genetics
Multi-omics
Multiomics
Nomenclature
Online databases
Phylogeny
Plant layout
Plant sciences
Plants
Plants (botany)
Quality control
Software
Taxonomy
Transcriptome
Transcriptomes
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Summary:The ANA-grade, encompassing early-diverging angiosperm lineages, Amborellales, Nymphaeales, and Austrobaileyales, represents a fundamental phase in the evolutionary history of flowering plants. Since the completion of key assembly of the Amborella genome, the continuous influx of omics data from the lineage underscores the need for a specialized database. Here, we introduce the ANA-grade Genome Database (ANAgdb, https://anagenome.cn/ ), which integrates multi-omics data including 11 genomes, 167 transcriptomes, and 10 miRNAomes, as well as extensive taxonomic details specific to the ANA-grade. Designed with an array of user-friendly tools, ANAgdb not only facilitates the effective storage, querying, and analysis of data but also enables the integration and dissemination of crucial genomic and taxonomic information. By integrating the comprehensive resources and tools, ANAgdb aims to significantly advance research in phylogenomics and taxonomic studies, providing a robust platform for researchers to explore the genetic and morphological diversities of these ancient plant lineages.
ISSN:1471-2229
1471-2229
DOI:10.1186/s12870-024-05613-4