Phenotypic and Molecular Characterization of Carbapenem-Heteroresistant Bacteroides fragilis Strains

• Published in: Antibiotics (Basel) 2022-04, Vol.11 (5), p.590
• Main Authors: Baaity, Zain, von Loewenich, Friederike D, Nagy, Elisabeth, Orosz, László, Burián, Katalin, Somogyvári, Ferenc, Sóki, József
• Format: Article
• Language: English
• Subjects: Abscesses; Antibiotic resistance; Antibiotics; Bacteroides fragilis; carbapenem resistance; Carbapenemase; Cell division; Dilution; Drug resistance; Enzymes; Gene expression; Genotype & phenotype; GNAT acetyltransferase toxin; heterogeneous resistance; Imipenem; Lysine; Microbiota; Molecular modelling; Parameter identification; Pathogens; Phenotypes; Population studies; Staphylococcus infections; Stochastic processes; Stochasticity; toxin-antitoxin pair; Toxins
• ISSN: 2079-6382; 2079-6382
• DOI: 10.3390/antibiotics11050590

Carbapenem-resistant strains usually emerge by an insertion sequence (IS) jump into the upstream region of the carbapenemase gene. However, intermediate or fully resistant -positive strains also exist. These do not have such IS element activations, but usually have heterogeneous resistance (HR) phenotypes, as detected by a disc diffusion or gradient tests. Heteroresistance is a serious antibiotic resistance problem, whose molecular mechanisms are not fully understood. We aim to characterize HR and investigate diagnostic issues in the set of -positive strains using phenotypic and molecular methods. Of the phenotypic methods used, the population analysis profile (PAP) and area under curve (AUC) measurements were the best prognostic markers for HR. PAP AUC, imipenem agar dilution and imipenemase production corresponded well with each other. We also identified a saturation curve parameter (quasi-PAP curves), which correlated well with these phenotypic traits, implying that HR is a stochastic process. The genes, on a previously defined ' element', act in a complex manner to produce the HR phenotype, including a lysine-acetylating toxin and a lysine-rich peptide. Furthermore, imipenem HR is triggered by imipenem. The two parameters that most correlate with the others are imipenemase production and 'GNAT' expression, which prompted us to suspect that carbapenem heteroresistance of the B. fragilis strains is stochastically regulated and is mediated by the altered imipenemase production.