Whole genomes from bacteria collected at diagnostic units around the world 2020

• Published in: Scientific data 2023-09, Vol.10 (1), p.628-628, Article 628
• Main Authors: Nag, Sidsel, Larsen, Gunhild, Szarvas, Judit, Birkedahl, Laura Elmlund Kohl, Gulyás, Gábor Máté, Ciok, Wojchiech Jakub, Lagermann, Timmie Mikkel, Tafaj, Silva, Bradbury, Susan, Collignon, Peter, Daley, Denise, Dougnon, Victorien, Fabiyi, Kafayath, Coulibaly, Boubacar, Dembélé, René, Nikiema, Georgette, Magloire, Natama, Ouindgueta, Isidore Juste, Hossain, Zenat Zebin, Begum, Anowara, Donchev, Deyan, Diggle, Mathew, Turnbull, LeeAnn, Lévesque, Simon, Berlinger, Livia, Sogaard, Kirstine Kobberoe, Guevara, Paula Diaz, Valderrama, Carolina Duarte, Maikanti, Panagiota, Amlerova, Jana, Drevinek, Pavel, Tkadlec, Jan, Dilas, Milica, Kaasch, Achim, Westh, Henrik Torkil, Bachtarzi, Mohamed Azzedine, Amhis, Wahiba, Salazar, Carolina Elisabeth Satán, Villacis, JoséEduardo, Lúzon, Mária Angeles Dominguez, Palau, Dámaris Berbel, Duployez, Claire, Paluche, Maxime, Asante-Sefa, Solomon, Moller, Mie, Ip, Margaret, Mareković, Ivana, Pál-Sonnevend, Agnes, Cocuzza, Clementiza Elvezia, Dambrauskiene, Asta, Macanze, Alexandre, Cossa, Anelsio, Mandomando, Inácio, Nwajiobi-Princewill, Philip, Okeke, Iruka N., Kehinde, Aderemi O., Adebiyi, Ini, Akintayo, Ifeoluwa, Popoola, Oluwafemi, Onipede, Anthony, Blomfeldt, Anita, Nyquist, Nora Elisabeth, Bocker, Kiri, Ussher, James, Ali, Amjad, Ullah, Nimat, Khan, Habibullah, Gustafson, Natalie Weiler, Jarrar, Ikhlas, Al-Hamad, Arif, Luvira, Viravarn, Paveenkittiporn, Wantana, Baran, Irmak, Mwansa, James C. L., Sikakwa, Linda, Yamba, Kaunda, Hendriksen, Rene Sjogren, Aarestrup, Frank Moller
• Format: Article
• Language: English
• Subjects: 631/208/212/2305; 631/326/22/1434; 692/420/254; 706/134; 706/648/697/129/2043; Antimicrobial agents; Bacterial infections; Data Descriptor; Datasets; Drug resistance; Ethics; Genetic testing; Genomes; Humanities and Social Sciences; Metadata; multidisciplinary; Participation; Pathogens; Phylogenetics; Review boards; Science; Science (multidisciplinary)
• ISSN: 2052-4463; 2052-4463
• DOI: 10.1038/s41597-023-02502-7

The Two Weeks in the World research project has resulted in a dataset of 3087 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units in 35 countries around the world during 2020. A relational database is available with metadata and summary data from selected bioinformatic analysis, such as species prediction and identification of acquired resistance genes.