Downregulation of zinc finger protein 71 in laryngeal squamous cell carcinoma tissues and its potential molecular mechanism and clinical significance: a study based on immunohistochemistry staining and data mining

• Published in: World journal of surgical oncology 2022-11, Vol.20 (1), p.1-359, Article 359
• Main Authors: Jiang, Fang-Cheng, Luo, Jia-Yuan, Dang, Yi-Wu, Lu, Hui-Ping, Li, Dong-Ming, Huang, Zhi-Guang, Tang, Yu-Lu, Fang, Ye-Ying, Tang, Yu-Xing, Su, Ya-Si, Dai, Wen-Bin, Pan, Shang-Ling, Feng, Zhen-Bo, Chen, Gang, He, Juan
• Format: Article
• Language: English
• Subjects: Antibodies; Bias; Cancer; Clinical significance; Correlation analysis; Data mining; Datasets; Development and progression; Enrichment; Gene expression; Gene sequencing; Genes; Genomes; Health aspects; Immune infiltration; Immune system; Immunohistochemistry; Immunohistochemistry (IHC) staining; Infiltration; Laryngeal cancer; Laryngeal squamous cell carcinoma (LSCC); Metastases; Molecular mechanism; Next-generation sequencing; Patients; Plasma cells; Protein expression; Proteins; Risk factors; Single-cell RNA sequencing (scRNA-seq); Software; Squamous cell carcinoma; Staining; Statistical significance; Subpopulations; Tight junctions; Zinc; Zinc finger protein 71 (ZNF71); Zinc finger proteins
• ISSN: 1477-7819; 1477-7819
• DOI: 10.1186/s12957-022-02823-8

Background The molecular mechanism of laryngeal squamous cell carcinoma (LSCC) is not completely clear, which leads to poor prognosis and treatment difficulties for LSCC patients. To date, no study has reported the exact expression level of zinc finger protein 71 (ZNF71) and its molecular mechanism in LSCC. Methods In-house immunohistochemistry (IHC) staining (33 LSCC samples and 29 non-LSCC samples) was utilized in analyzing the protein expression level of ZNF71 in LSCC. Gene chips and high-throughput sequencing data collected from multiple public resources (313 LSCC samples and 192 non-LSCC samples) were utilized in analyzing the exact mRNA expression level of ZNF71 in LSCC. Single-cell RNA sequencing (scRNA-seq) data was used to explore the expression status of ZNF71 in different LSCC subpopulations. Enrichment analysis of ZNF71, its positively and differentially co-expressed genes (PDCEGs), and its downstream target genes was employed to detect the potential molecular mechanism of ZNF71 in LSCC. Moreover, we conducted correlation analysis between ZNF71 expression and immune infiltration. Results ZNF71 was downregulated at the protein level (area under the curve [AUC] = 0.93, p < 0.0001) and the mRNA level (AUC = 0.71, p = 0.023) in LSCC tissues. Patients with nodal metastasis had lower protein expression level of ZNF71 than patients without nodal metastasis (p < 0.05), and male LSCC patients had lower mRNA expression level of ZNF71 than female LSCC patients (p < 0.01). ZNF71 was absent in different LSCC subpopulations, including cancer cells, plasma cells, and tumor-infiltrated immune cells, based on scRNA-seq analysis. Enrichment analysis showed that ZNF71 and its PDCEGs may influence the progression of LSCC by regulating downstream target genes of ZNF71. These downstream target genes of ZNF71 were mainly enriched in tight junctions. Moreover, downregulation of ZNF71 may influence the development and even therapy of LSCC by reducing immune infiltration. Conclusion Downregulation of ZNF71 may promote the progression of LSCC by reducing tight junctions and immune infiltration; this requires further study. Keywords: Zinc finger protein 71 (ZNF71), Laryngeal squamous cell carcinoma (LSCC), Immunohistochemistry (IHC) staining, Single-cell RNA sequencing (scRNA-seq), Molecular mechanism, Immune infiltration