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Complete mitochondrial genome of the vulnerable malabar pufferfish Carinotetraodon travancoricus (Tetraodontiformes, Tetraodontidae)
Carinotetraodon travancoricus was classified as vulnerable on the IUCN Red List due to habitat loss and overharvesting for the aquarium trade. To gain its molecular information and thus contribute to help in conserving this vulnerable species, we determined the complete mitochondrial DNA of the C. t...
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Published in: | Mitochondrial DNA. Part B. Resources 2018-10, Vol.3 (2), p.1023-1024 |
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description | Carinotetraodon travancoricus was classified as vulnerable on the IUCN Red List due to habitat loss and overharvesting for the aquarium trade. To gain its molecular information and thus contribute to help in conserving this vulnerable species, we determined the complete mitochondrial DNA of the C. travancoricus. The size of the molecule is 16,542 nucleotides, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, a putative control region, and 1 origin of replication on the light-strand. The overall base composition includes C(28.8%), A(28.5%), T(27.1%), and G(15.6%). Moreover, the 13 PCGs encode 3800 amino acids in total. The result of the phylogenetic tree supports C. octofasciatus has a closest relationship with Tetraodon nigroviridis. |
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To gain its molecular information and thus contribute to help in conserving this vulnerable species, we determined the complete mitochondrial DNA of the C. travancoricus. The size of the molecule is 16,542 nucleotides, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, a putative control region, and 1 origin of replication on the light-strand. The overall base composition includes C(28.8%), A(28.5%), T(27.1%), and G(15.6%). Moreover, the 13 PCGs encode 3800 amino acids in total. The result of the phylogenetic tree supports C. octofasciatus has a closest relationship with Tetraodon nigroviridis.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2018.1511843</identifier><identifier>PMID: 33490556</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Carinotetraodon travancoricus ; mitogenome ; Mitogenome Announcement ; phylogenetic tree</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2018-10, Vol.3 (2), p.1023-1024</ispartof><rights>2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2018</rights><rights>2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2018 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c482t-e0deb32d299c167234ba054f0a904ac0d8b1952c8ff156091f90b11036a8b9a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800267/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800267/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27501,27923,27924,37012,53790,53792,59142,59143</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33490556$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Bingjian</creatorcontrib><creatorcontrib>Zhu, Kehua</creatorcontrib><creatorcontrib>Liu, Yifan</creatorcontrib><creatorcontrib>Jiang, Lihua</creatorcontrib><creatorcontrib>Lü, Zhenming</creatorcontrib><creatorcontrib>Liu, Liqin</creatorcontrib><creatorcontrib>Zhang, Weinan</creatorcontrib><creatorcontrib>Liu, Zhu</creatorcontrib><creatorcontrib>Duan, Wen</creatorcontrib><creatorcontrib>Gong, Li</creatorcontrib><title>Complete mitochondrial genome of the vulnerable malabar pufferfish Carinotetraodon travancoricus (Tetraodontiformes, Tetraodontidae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Carinotetraodon travancoricus was classified as vulnerable on the IUCN Red List due to habitat loss and overharvesting for the aquarium trade. To gain its molecular information and thus contribute to help in conserving this vulnerable species, we determined the complete mitochondrial DNA of the C. travancoricus. The size of the molecule is 16,542 nucleotides, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, a putative control region, and 1 origin of replication on the light-strand. The overall base composition includes C(28.8%), A(28.5%), T(27.1%), and G(15.6%). Moreover, the 13 PCGs encode 3800 amino acids in total. The result of the phylogenetic tree supports C. octofasciatus has a closest relationship with Tetraodon nigroviridis.</description><subject>Carinotetraodon travancoricus</subject><subject>mitogenome</subject><subject>Mitogenome Announcement</subject><subject>phylogenetic tree</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>DOA</sourceid><recordid>eNp9Uk1v1DAQjRCIVqU_AZRjkbrL-CuxLwi0KlCpEpe9WxPH3nXlxIudLOqdH07C7lbbC6ex5r15b6x5RfGewJKAhE-USaBMqCUFIpdEECI5e1Vczv3FDLw-e18U1zk_AgCpWF2r-m1xwRhXIER1WfxZxW4X7GDLzg_RbGPfJo-h3Ng-draMrhy2ttyPobcJmzDRMGCDqdyNztnkfN6WK0y-j4MdEsY29uVU99ibmLwZc3mzPgGDdzF1Nt-WZ60W7cd3xRuHIdvrY70q1t_u1qsfi4ef3-9XXx8Whks6LCy0tmG0pUoZUtWU8QZBcAeogKOBVjZECWqkc0RUoIhT0BACrELZKGRXxf1Bto34qHfJd5iedESv_zVi2mhMgzfBaiYbprgTvKGc13WraGXkZEyEIpQaPml9PmjtxqazrbH99KPwQvQl0vut3sS9riUArepJ4OYokOKv0eZBdz4bGwL2No5ZUy6hZhUFMVHFgWpSzDlZ92xDQM950Kc86DkP-piHae7D-Y7PU6frT4QvB4Lv58vg75hCqwd8CjG5NJ3QZ83-7_EXOiLHcQ</recordid><startdate>20181026</startdate><enddate>20181026</enddate><creator>Liu, Bingjian</creator><creator>Zhu, Kehua</creator><creator>Liu, Yifan</creator><creator>Jiang, Lihua</creator><creator>Lü, Zhenming</creator><creator>Liu, Liqin</creator><creator>Zhang, Weinan</creator><creator>Liu, Zhu</creator><creator>Duan, Wen</creator><creator>Gong, Li</creator><general>Taylor & Francis</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20181026</creationdate><title>Complete mitochondrial genome of the vulnerable malabar pufferfish Carinotetraodon travancoricus (Tetraodontiformes, Tetraodontidae)</title><author>Liu, Bingjian ; Zhu, Kehua ; Liu, Yifan ; Jiang, Lihua ; Lü, Zhenming ; Liu, Liqin ; Zhang, Weinan ; Liu, Zhu ; Duan, Wen ; Gong, Li</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c482t-e0deb32d299c167234ba054f0a904ac0d8b1952c8ff156091f90b11036a8b9a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Carinotetraodon travancoricus</topic><topic>mitogenome</topic><topic>Mitogenome Announcement</topic><topic>phylogenetic tree</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Bingjian</creatorcontrib><creatorcontrib>Zhu, Kehua</creatorcontrib><creatorcontrib>Liu, Yifan</creatorcontrib><creatorcontrib>Jiang, Lihua</creatorcontrib><creatorcontrib>Lü, Zhenming</creatorcontrib><creatorcontrib>Liu, Liqin</creatorcontrib><creatorcontrib>Zhang, Weinan</creatorcontrib><creatorcontrib>Liu, Zhu</creatorcontrib><creatorcontrib>Duan, Wen</creatorcontrib><creatorcontrib>Gong, Li</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Bingjian</au><au>Zhu, Kehua</au><au>Liu, Yifan</au><au>Jiang, Lihua</au><au>Lü, Zhenming</au><au>Liu, Liqin</au><au>Zhang, Weinan</au><au>Liu, Zhu</au><au>Duan, Wen</au><au>Gong, Li</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete mitochondrial genome of the vulnerable malabar pufferfish Carinotetraodon travancoricus (Tetraodontiformes, Tetraodontidae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2018-10-26</date><risdate>2018</risdate><volume>3</volume><issue>2</issue><spage>1023</spage><epage>1024</epage><pages>1023-1024</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Carinotetraodon travancoricus was classified as vulnerable on the IUCN Red List due to habitat loss and overharvesting for the aquarium trade. To gain its molecular information and thus contribute to help in conserving this vulnerable species, we determined the complete mitochondrial DNA of the C. travancoricus. The size of the molecule is 16,542 nucleotides, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, a putative control region, and 1 origin of replication on the light-strand. The overall base composition includes C(28.8%), A(28.5%), T(27.1%), and G(15.6%). Moreover, the 13 PCGs encode 3800 amino acids in total. The result of the phylogenetic tree supports C. octofasciatus has a closest relationship with Tetraodon nigroviridis.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33490556</pmid><doi>10.1080/23802359.2018.1511843</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Carinotetraodon travancoricus mitogenome Mitogenome Announcement phylogenetic tree |
title | Complete mitochondrial genome of the vulnerable malabar pufferfish Carinotetraodon travancoricus (Tetraodontiformes, Tetraodontidae) |
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