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Post genomics era for orchid research
Among 300,000 species in angiosperms, Orchidaceae containing 30,000 species is one of the largest families. Almost every habitats on earth have orchid plants successfully colonized, and it indicates that orchids are among the plants with significant ecological and evolutionary importance. So far, fo...
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| Published in: | Botanical studies 2017-12, Vol.58 (1), p.61-61, Article 61 |
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| container_end_page | 61 |
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| container_start_page | 61 |
| container_title | Botanical studies |
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| creator | Tsai, Wen-Chieh Dievart, Anne Hsu, Chia-Chi Hsiao, Yu-Yun Chiou, Shang-Yi Huang, Hsin Chen, Hong-Hwa |
| description | Among 300,000 species in angiosperms, Orchidaceae containing 30,000 species is one of the largest families. Almost every habitats on earth have orchid plants successfully colonized, and it indicates that orchids are among the plants with significant ecological and evolutionary importance. So far, four orchid genomes have been sequenced, including
Phalaenopsis equestris
,
Dendrobium catenatum
,
Dendrobium officinale
, and
Apostaceae shengen
. Here, we review the current progress and the direction of orchid research in the post genomics era. These include the orchid genome evolution, genome mapping (genome-wide association analysis, genetic map, physical map), comparative genomics (especially receptor-like kinase and terpene synthase), secondary metabolomics, and genome editing. |
| doi_str_mv | 10.1186/s40529-017-0213-7 |
| format | article |
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Phalaenopsis equestris
,
Dendrobium catenatum
,
Dendrobium officinale
, and
Apostaceae shengen
. Here, we review the current progress and the direction of orchid research in the post genomics era. These include the orchid genome evolution, genome mapping (genome-wide association analysis, genetic map, physical map), comparative genomics (especially receptor-like kinase and terpene synthase), secondary metabolomics, and genome editing.</description><identifier>ISSN: 1817-406X</identifier><identifier>ISSN: 1999-3110</identifier><identifier>EISSN: 1999-3110</identifier><identifier>DOI: 10.1186/s40529-017-0213-7</identifier><identifier>PMID: 29234904</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Angiosperms ; Association analysis ; Biological evolution ; Biomedical and Life Sciences ; chromosome mapping ; Comparative genomics ; Dendrobium officinale ; Ecology ; evolution ; gene editing ; Gene mapping ; Genetic analysis ; genome ; Genome editing ; Genome evolution ; genome-wide association study ; Genomes ; Genomics ; GWAS ; habitats ; Life Sciences ; Metabolomics ; Molecular Biology ; Orchid conservation ; Orchidaceae ; Phalaenopsis ; Plant Genetics and Genomics ; Plant Sciences ; Review ; Terpene synthase</subject><ispartof>Botanical studies, 2017-12, Vol.58 (1), p.61-61, Article 61</ispartof><rights>The Author(s) 2017</rights><rights>Botanical Studies is a copyright of Springer, (2017). All Rights Reserved. © 2017. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c569t-b4ec1ae382e75d66e41b2d143f8bfaf91496b7360d81f924e38d0664ce292f923</citedby><cites>FETCH-LOGICAL-c569t-b4ec1ae382e75d66e41b2d143f8bfaf91496b7360d81f924e38d0664ce292f923</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2072347344/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2072347344?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,25732,27903,27904,36991,36992,44569,53770,53772,74873</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29234904$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tsai, Wen-Chieh</creatorcontrib><creatorcontrib>Dievart, Anne</creatorcontrib><creatorcontrib>Hsu, Chia-Chi</creatorcontrib><creatorcontrib>Hsiao, Yu-Yun</creatorcontrib><creatorcontrib>Chiou, Shang-Yi</creatorcontrib><creatorcontrib>Huang, Hsin</creatorcontrib><creatorcontrib>Chen, Hong-Hwa</creatorcontrib><title>Post genomics era for orchid research</title><title>Botanical studies</title><addtitle>Bot Stud</addtitle><addtitle>Bot Stud</addtitle><description>Among 300,000 species in angiosperms, Orchidaceae containing 30,000 species is one of the largest families. Almost every habitats on earth have orchid plants successfully colonized, and it indicates that orchids are among the plants with significant ecological and evolutionary importance. So far, four orchid genomes have been sequenced, including
Phalaenopsis equestris
,
Dendrobium catenatum
,
Dendrobium officinale
, and
Apostaceae shengen
. Here, we review the current progress and the direction of orchid research in the post genomics era. These include the orchid genome evolution, genome mapping (genome-wide association analysis, genetic map, physical map), comparative genomics (especially receptor-like kinase and terpene synthase), secondary metabolomics, and genome editing.</description><subject>Angiosperms</subject><subject>Association analysis</subject><subject>Biological evolution</subject><subject>Biomedical and Life Sciences</subject><subject>chromosome mapping</subject><subject>Comparative genomics</subject><subject>Dendrobium officinale</subject><subject>Ecology</subject><subject>evolution</subject><subject>gene editing</subject><subject>Gene mapping</subject><subject>Genetic analysis</subject><subject>genome</subject><subject>Genome editing</subject><subject>Genome evolution</subject><subject>genome-wide association study</subject><subject>Genomes</subject><subject>Genomics</subject><subject>GWAS</subject><subject>habitats</subject><subject>Life Sciences</subject><subject>Metabolomics</subject><subject>Molecular Biology</subject><subject>Orchid conservation</subject><subject>Orchidaceae</subject><subject>Phalaenopsis</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Sciences</subject><subject>Review</subject><subject>Terpene synthase</subject><issn>1817-406X</issn><issn>1999-3110</issn><issn>1999-3110</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNqFkV9rFTEQxYMotlY_QF_KghT6sjr5s8nmpSDFaqGgDwq-hWx2cruXvZs22Sv02zvXrbUtiC9JmDn55UwOY4cc3nHe6vdFQSNsDdzUILiszTO2z621teQcntO5pY4C_WOPvSplDaC5kOIl2xNWSGVB7bPjr6nM1QqntBlCqTD7KqZcpRyuhr7KWNDT8TV7Ef1Y8M3dfsC-n3_8dva5vvzy6eLsw2UdGm3nulMYuEfZCjRNrzUq3omeKxnbLvpoubK6M1JD3_JohSJlD1qrgGSICvKAXSzcPvm1u87Dxudbl_zgfhdSXjmf5yGM6KSVXUuzQpRR6ab1ALLTQnUNdYJVxDpdWNfbboN9wGnOfnwEfdyZhiu3Sj9dY4QBMAQ4uQPkdLPFMrvNUAKOo58wbYsTIKC1QOt_pdwarZRoZEPSt0-k67TNE_0qAQ3FYqTameeLKuRUSsZ475uD22XvluwdZe922bud36OHA9_f-BM2CcQiKNSaVpj_Pv1v6i_nmrY2</recordid><startdate>20171212</startdate><enddate>20171212</enddate><creator>Tsai, Wen-Chieh</creator><creator>Dievart, Anne</creator><creator>Hsu, Chia-Chi</creator><creator>Hsiao, Yu-Yun</creator><creator>Chiou, Shang-Yi</creator><creator>Huang, Hsin</creator><creator>Chen, Hong-Hwa</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><general>SpringerOpen</general><scope>C6C</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20171212</creationdate><title>Post genomics era for orchid research</title><author>Tsai, Wen-Chieh ; Dievart, Anne ; Hsu, Chia-Chi ; Hsiao, Yu-Yun ; Chiou, Shang-Yi ; Huang, Hsin ; Chen, Hong-Hwa</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c569t-b4ec1ae382e75d66e41b2d143f8bfaf91496b7360d81f924e38d0664ce292f923</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Angiosperms</topic><topic>Association analysis</topic><topic>Biological evolution</topic><topic>Biomedical and Life Sciences</topic><topic>chromosome mapping</topic><topic>Comparative genomics</topic><topic>Dendrobium officinale</topic><topic>Ecology</topic><topic>evolution</topic><topic>gene editing</topic><topic>Gene mapping</topic><topic>Genetic analysis</topic><topic>genome</topic><topic>Genome editing</topic><topic>Genome evolution</topic><topic>genome-wide association study</topic><topic>Genomes</topic><topic>Genomics</topic><topic>GWAS</topic><topic>habitats</topic><topic>Life Sciences</topic><topic>Metabolomics</topic><topic>Molecular Biology</topic><topic>Orchid conservation</topic><topic>Orchidaceae</topic><topic>Phalaenopsis</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Sciences</topic><topic>Review</topic><topic>Terpene synthase</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tsai, Wen-Chieh</creatorcontrib><creatorcontrib>Dievart, Anne</creatorcontrib><creatorcontrib>Hsu, Chia-Chi</creatorcontrib><creatorcontrib>Hsiao, Yu-Yun</creatorcontrib><creatorcontrib>Chiou, Shang-Yi</creatorcontrib><creatorcontrib>Huang, Hsin</creatorcontrib><creatorcontrib>Chen, Hong-Hwa</creatorcontrib><collection>SpringerOpen</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Botanical studies</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tsai, Wen-Chieh</au><au>Dievart, Anne</au><au>Hsu, Chia-Chi</au><au>Hsiao, Yu-Yun</au><au>Chiou, Shang-Yi</au><au>Huang, Hsin</au><au>Chen, Hong-Hwa</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Post genomics era for orchid research</atitle><jtitle>Botanical studies</jtitle><stitle>Bot Stud</stitle><addtitle>Bot Stud</addtitle><date>2017-12-12</date><risdate>2017</risdate><volume>58</volume><issue>1</issue><spage>61</spage><epage>61</epage><pages>61-61</pages><artnum>61</artnum><issn>1817-406X</issn><issn>1999-3110</issn><eissn>1999-3110</eissn><abstract>Among 300,000 species in angiosperms, Orchidaceae containing 30,000 species is one of the largest families. Almost every habitats on earth have orchid plants successfully colonized, and it indicates that orchids are among the plants with significant ecological and evolutionary importance. So far, four orchid genomes have been sequenced, including
Phalaenopsis equestris
,
Dendrobium catenatum
,
Dendrobium officinale
, and
Apostaceae shengen
. Here, we review the current progress and the direction of orchid research in the post genomics era. These include the orchid genome evolution, genome mapping (genome-wide association analysis, genetic map, physical map), comparative genomics (especially receptor-like kinase and terpene synthase), secondary metabolomics, and genome editing.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>29234904</pmid><doi>10.1186/s40529-017-0213-7</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | Botanical studies, 2017-12, Vol.58 (1), p.61-61, Article 61 |
| issn | 1817-406X 1999-3110 1999-3110 |
| language | eng |
| recordid | cdi_doaj_primary_oai_doaj_org_article_393b89990f3f4658a003b624b5393c94 |
| source | Publicly Available Content Database; Springer Nature - SpringerLink Journals - Fully Open Access ; PubMed Central |
| subjects | Angiosperms Association analysis Biological evolution Biomedical and Life Sciences chromosome mapping Comparative genomics Dendrobium officinale Ecology evolution gene editing Gene mapping Genetic analysis genome Genome editing Genome evolution genome-wide association study Genomes Genomics GWAS habitats Life Sciences Metabolomics Molecular Biology Orchid conservation Orchidaceae Phalaenopsis Plant Genetics and Genomics Plant Sciences Review Terpene synthase |
| title | Post genomics era for orchid research |
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