Transcriptome Study in Sicilian Patients with Autism Spectrum Disorder

• Published in: Biomedicines 2024-06, Vol.12 (7), p.1402
• Main Authors: Salemi, Michele, Schillaci, Francesca A, Lanza, Giuseppe, Marchese, Giovanna, Salluzzo, Maria Grazia, Cordella, Angela, Caniglia, Salvatore, Bruccheri, Maria Grazia, Truda, Anna, Greco, Donatella, Ferri, Raffaele, Romano, Corrado
• Format: Article
• Language: English
• Subjects: Attention deficit hyperactivity disorder; Autism; autism spectrum disorder; Bioinformatics; Brain research; Data analysis; Enrichment; Epigenetics; Gene expression; Gene set enrichment analysis; Generalized linear models; Genomes; Hypoxia; Inflammation; Intellectual disabilities; Ischemia; Leukocytes (mononuclear); Mental disorders; mRNAs; Oxidative stress; Patients; Peripheral blood mononuclear cells; Risk factors; RNA sequencing; Statistical analysis; transcriptome analysis; Transcriptomes
• ISSN: 2227-9059; 2227-9059
• DOI: 10.3390/biomedicines12071402

ASD is a complex condition primarily rooted in genetics, although influenced by environmental, prenatal, and perinatal risk factors, ultimately leading to genetic and epigenetic alterations. These mechanisms may manifest as inflammatory, oxidative stress, hypoxic, or ischemic damage. To elucidate potential variances in gene expression in ASD, a transcriptome analysis of peripheral blood mononuclear cells was conducted via RNA-seq on 12 ASD patients and 13 healthy controls, all of Sicilian ancestry to minimize environmental confounds. A total of 733 different statistically significant genes were identified between the two cohorts. Gene Set Enrichment Analysis (GSEA) and Gene Ontology (GO) terms were employed to explore the pathways influenced by differentially expressed mRNAs. GSEA revealed GO pathways strongly associated with ASD, namely the GO Biological Process term "Response to Oxygen-Containing Compound". Additionally, the GO Cellular Component pathway "Mitochondrion" stood out among other pathways, with differentially expressed genes predominantly affiliated with this specific pathway, implicating the involvement of different mitochondrial functions in ASD. Among the differentially expressed genes, was particularly highlighted, belonging to three GO pathways. can modulate pro-inflammatory responses, with its intracellular cascades triggering the activation of several kinases, thus suggesting its potential utility as a biomarker of pro-inflammatory processes in ASD.