Genome Characterisation of the CGMMV Virus Population in Australia-Informing Plant Biosecurity Policy

The detection of cucumber green mottle mosaic (CGMMV) in the Northern Territory (NT), Australia, in 2014 led to the introduction of strict quarantine measures for the importation of cucurbit seeds by the Australian federal government. Further detections in Queensland, Western Australia (WA), New Sou...

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Published in:Viruses 2023-03, Vol.15 (3), p.743
Main Authors: Mackie, Joanne, Campbell, Paul R, Kehoe, Monica A, Tran-Nguyen, Lucy T T, Rodoni, Brendan C, Constable, Fiona E
Format: Article
Language:English
Subjects:
Agriculture
Bioinformatics
Biosecurity
Citrullus
Cladistic analysis
cucumber green mottle mosaic virus
Cucumbers
Cucumis sativus
Diseases and pests
Distribution
Epidemics
Genetic analysis
Genetic aspects
Genetic diversity
Genomes
Health services
Identification and classification
Laboratories
median-joining network
Northern Territory
Phylogenetics
Phylogeny
Plant Diseases - prevention & control
Plant viruses
Proteins
Seeds
Surveillance
Tobamovirus - genetics
Virus diseases of plants
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description The detection of cucumber green mottle mosaic (CGMMV) in the Northern Territory (NT), Australia, in 2014 led to the introduction of strict quarantine measures for the importation of cucurbit seeds by the Australian federal government. Further detections in Queensland, Western Australia (WA), New South Wales and South Australia occurred in the period 2015-2020. To explore the diversity of the current Australian CGMMV population, 35 new coding sequence complete genomes for CGMMV isolates from Australian incursions and surveys were prepared for this study. In conjunction with published genomes from the NT and WA, sequence, phylogenetic, and genetic variation and variant analyses were performed, and the data were compared with those for international CGMMV isolates. Based on these analyses, it can be inferred that the Australian CGMMV population resulted from a single virus source via multiple introductions.
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subjects Agriculture
Bioinformatics
Biosecurity
Citrullus
Cladistic analysis
cucumber green mottle mosaic virus
Cucumbers
Cucumis sativus
Diseases and pests
Distribution
Epidemics
Genetic analysis
Genetic aspects
Genetic diversity
Genomes
Health services
Identification and classification
Laboratories
median-joining network
Northern Territory
Phylogenetics
Phylogeny
Plant Diseases - prevention & control
Plant viruses
Proteins
Seeds
Surveillance
Tobamovirus - genetics
Virus diseases of plants
title Genome Characterisation of the CGMMV Virus Population in Australia-Informing Plant Biosecurity Policy
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