Analysis of Survival-Related lncRNA Landscape Identifies A Role for LINC01537 in Energy Metabolism and Lung Cancer Progression

• Published in: International journal of molecular sciences 2019-08, Vol.20 (15), p.3713
• Main Authors: Gong, Wei, Yang, Lei, Wang, Yuanyuan, Xian, Jianfeng, Qiu, Fuman, Liu, Li, Lin, Mingzhu, Feng, Yingyi, Zhou, Yifeng, Lu, Jiachun
• Format: Article
• Language: English
• Subjects: A549 Cells; Animals; Apoptosis; Cancer therapies; Cell adhesion & migration; Cell growth; Cloning; Comparative analysis; Cyclic Nucleotide Phosphodiesterases, Type 2 - genetics; Disease Progression; Drugs; Energy Metabolism; Female; Gene Expression Regulation, Neoplastic; Gene Regulatory Networks; Humans; In vivo methods and tests; LINC01537; Lung cancer; Lung Neoplasms - genetics; Lung Neoplasms - metabolism; Lung Neoplasms - pathology; Male; Medical prognosis; Metabolism; Mice, Inbred BALB C; Middle Aged; mRNA stability; Pathogenesis; PDE2A; Proteins; Respiration; RNA, Long Noncoding - genetics; Roles; Stability tests; Survival
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms20153713

Many long non-coding RNAs (lncRNAs) have emerged as good biomarkers and potential therapeutic targets for various cancers. We aimed to get a detailed understanding of the lncRNA landscape that is associated with lung cancer survival. A comparative analysis between our RNA sequencing (RNA-seq) data and TCGA datasets was conducted to reveal lncRNAs with significant correlations with lung cancer survival and then the association of the most promising lncRNA was validated in a cohort of 243 lung cancer patients. Comparing RNA-seq data with TCGA ones, 84 dysregulated lncRNAs were identified in lung cancer tissues, among which 10 lncRNAs were significantly associated with lung cancer survival. LINC01537 was the most significant one ( = 2.95 × 10 ). Validation analysis confirmed the downregulation of LINC01537 in lung cancer. LINC01537 was observed to inhibit tumor growth and metastasis. It also increased cellular sensitivity to nilotinib. PDE2A (phosphodiesterase 2A) was further identified to be a target of LINC01537 and it was seen that LINC01537 promoted PDE2A expression via RNA-RNA interaction to stabilize PDE2A mRNA and thus echoed effects of PDE2A on energy metabolism including both Warburg effect and mitochondrial respiration. Other regulators of tumor energy metabolism were also affected by LINC01537. These results elucidate a suppressed role of LINC01537 in lung cancer development involving tumor metabolic reprogramming, and we believe that it might be a biomarker for cancer survival prediction and therapy.