DNA origami drives gene expression in a human cell culture system

• Published in: Scientific reports 2024-11, Vol.14 (1), p.27364-12, Article 27364
• Main Authors: Oh, Chang Yong, Kaur, Haninder, Tuteja, Geetu, Henderson, Eric R.
• Format: Article
• Language: English
• Subjects: 631/1647/2017; 631/1647/2300; 631/208; 631/208/199; 631/208/205; 631/337; 631/61; 631/80; Cell culture; Cell Culture Techniques - methods; Deoxyribonucleic acid; DNA; DNA - genetics; DNA - metabolism; DNA nanotechnology; DNA origami; DNA vaccines; DNA, Single-Stranded - genetics; DNA, Single-Stranded - metabolism; DNA-directed RNA polymerase; Flow cytometry; Gene Expression; Genetic code; Genetic control; Green fluorescent protein (GFP); Human cell line; Humanities and Social Sciences; Humans; multidisciplinary; Nanoparticles; Nanoparticles - chemistry; Nanotechnology; Nucleic Acid Conformation; Nucleic acids; Nucleotide sequence; Promoter Regions, Genetic; RNA modification; RNA polymerase; Science; Science (multidisciplinary); Single-stranded DNA
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/s41598-024-78399-y

Self-assembling DNA nanoparticles have the potential to significantly advance the targeted delivery of molecular cargo owing to their chemical and architectural flexibility. Recently, it has been demonstrated that the genetic code embedded in DNA nanoparticles produced by the method of DNA origami or related techniques can be recognized and copied by RNA polymerase in vitro. Further, sculpted DNA nanoparticles can serve as a substrate for Cas9-mediated gene modification and gene expression in cell culture. In the present study, we further investigate the ability of DNA origami nanoparticles to be expressed in a human cell line with emphasis on the impact of single-stranded DNA (ssDNA) domains and the contributions of the architectural disposition of genetic control elements, namely promoter and enhancer sequences. Our findings suggest that while cells possess the remarkable capability to express genes within highly folded architectures, the presence and relative density and location of ssDNA domains appears to influence overall levels of gene expression. These results suggest that it may be possible to nuance folded DNA nanoparticle architecture to regulate the rate and/or level of gene expression. Considering the highly malleable architecture and chemistry of self-assembling DNA nanoparticles, these findings motivate further exploration of their potential as an economic nanotechnology platform for targeted gene editing, nucleic acid-based vaccines, and related biotherapeutic applications.