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Cinnamomi ramulus inhibits cancer cells growth by inducing G2/M arrest
(CR) is one of the most widely used traditional Chinese medicine (TCM) with anti-cancer effects. Analyzing transcriptomic responses of different human cell lines to TCM treatment is a promising approach to understand the unbiased mechanism of TCM. This study treated ten cancer cell lines with differ...
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Published in: | Frontiers in pharmacology 2023-03, Vol.14, p.1121799 |
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description | (CR) is one of the most widely used traditional Chinese medicine (TCM) with anti-cancer effects. Analyzing transcriptomic responses of different human cell lines to TCM treatment is a promising approach to understand the unbiased mechanism of TCM.
This study treated ten cancer cell lines with different CR concentrations, followed by mRNA sequencing. Differential expression (DE) analysis and gene set enrichment analysis (GSEA) were utilized to analyze transcriptomic data. Finally, the
screening results were verified by
experiments.
Both DE and GSEA analysis suggested the Cell cycle pathway was the most perturbated pathway by CR across these cell lines. By analyzing the clinical significance and prognosis of G2/M related genes (PLK1, CDK1, CCNB1, and CCNB2) in various cancer tissues, we found that they were up-regulated in most cancer types, and their down-regulation showed better overall survival rates in cancer patients. Finally,
experiments validation on A549, Hep G2, and HeLa cells suggested that CR can inhibit cell growth by suppressing the PLK1/CDK1/ Cyclin B axis.
This is the first study to apply transcriptomic analysis to investigate the cancer cell growth inhibition of CR on various human cancer cell lines. The core effect of CR on ten cancer cell lines is to induce G2/M arrest by inhibiting the PLK1/CDK1/Cyclin B axis. |
doi_str_mv | 10.3389/fphar.2023.1121799 |
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This study treated ten cancer cell lines with different CR concentrations, followed by mRNA sequencing. Differential expression (DE) analysis and gene set enrichment analysis (GSEA) were utilized to analyze transcriptomic data. Finally, the
screening results were verified by
experiments.
Both DE and GSEA analysis suggested the Cell cycle pathway was the most perturbated pathway by CR across these cell lines. By analyzing the clinical significance and prognosis of G2/M related genes (PLK1, CDK1, CCNB1, and CCNB2) in various cancer tissues, we found that they were up-regulated in most cancer types, and their down-regulation showed better overall survival rates in cancer patients. Finally,
experiments validation on A549, Hep G2, and HeLa cells suggested that CR can inhibit cell growth by suppressing the PLK1/CDK1/ Cyclin B axis.
This is the first study to apply transcriptomic analysis to investigate the cancer cell growth inhibition of CR on various human cancer cell lines. The core effect of CR on ten cancer cell lines is to induce G2/M arrest by inhibiting the PLK1/CDK1/Cyclin B axis.</description><identifier>ISSN: 1663-9812</identifier><identifier>EISSN: 1663-9812</identifier><identifier>DOI: 10.3389/fphar.2023.1121799</identifier><identifier>PMID: 37007025</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>cell cycle ; Cinnamomi ramulus ; differential expression analysis (DE) ; gene set enrichment analysis (GSEA) ; Pharmacology ; transcriptomic analysis</subject><ispartof>Frontiers in pharmacology, 2023-03, Vol.14, p.1121799</ispartof><rights>Copyright © 2023 Li, Huang, Lin, Zuo, Tang and Huang.</rights><rights>Copyright © 2023 Li, Huang, Lin, Zuo, Tang and Huang. 2023 Li, Huang, Lin, Zuo, Tang and Huang</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c420t-9e3070e56803eb54010486112456c40c0da26213efcb55bcb5565e6efaf9d3ab3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10063822/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10063822/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37007025$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Jing</creatorcontrib><creatorcontrib>Huang, Hsi-Yuan</creatorcontrib><creatorcontrib>Lin, Yang-Chi-Dung</creatorcontrib><creatorcontrib>Zuo, Huali</creatorcontrib><creatorcontrib>Tang, Yun</creatorcontrib><creatorcontrib>Huang, Hsien-Da</creatorcontrib><title>Cinnamomi ramulus inhibits cancer cells growth by inducing G2/M arrest</title><title>Frontiers in pharmacology</title><addtitle>Front Pharmacol</addtitle><description>(CR) is one of the most widely used traditional Chinese medicine (TCM) with anti-cancer effects. Analyzing transcriptomic responses of different human cell lines to TCM treatment is a promising approach to understand the unbiased mechanism of TCM.
This study treated ten cancer cell lines with different CR concentrations, followed by mRNA sequencing. Differential expression (DE) analysis and gene set enrichment analysis (GSEA) were utilized to analyze transcriptomic data. Finally, the
screening results were verified by
experiments.
Both DE and GSEA analysis suggested the Cell cycle pathway was the most perturbated pathway by CR across these cell lines. By analyzing the clinical significance and prognosis of G2/M related genes (PLK1, CDK1, CCNB1, and CCNB2) in various cancer tissues, we found that they were up-regulated in most cancer types, and their down-regulation showed better overall survival rates in cancer patients. Finally,
experiments validation on A549, Hep G2, and HeLa cells suggested that CR can inhibit cell growth by suppressing the PLK1/CDK1/ Cyclin B axis.
This is the first study to apply transcriptomic analysis to investigate the cancer cell growth inhibition of CR on various human cancer cell lines. The core effect of CR on ten cancer cell lines is to induce G2/M arrest by inhibiting the PLK1/CDK1/Cyclin B axis.</description><subject>cell cycle</subject><subject>Cinnamomi ramulus</subject><subject>differential expression analysis (DE)</subject><subject>gene set enrichment analysis (GSEA)</subject><subject>Pharmacology</subject><subject>transcriptomic analysis</subject><issn>1663-9812</issn><issn>1663-9812</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVkU1P3DAQhq2qqKCFP9BDlSOXXcYfcexThVZdigTiAmdr7Di7Rkm8tZNW_HsSdotgDmPL43nm4yXkO4UV50pfNfsdphUDxleUMlpp_YWcUSn5UivKvn64n5KLnJ9hMq41l-IbOeUVQAWsPCObdeh77GIXioTd2I65CP0u2DDkwmHvfCqcb9tcbFP8N-wK-zLF69GFflvcsKv7AlPyeTgnJw222V8czwV52vx6XP9e3j3c3K6v75ZOMBiW2vOpri-lAu5tKYCCUHLqX5TSCXBQI5OMct84W5Z2drL00jfY6Jqj5Qtye-DWEZ_NPoUO04uJGMzbQ0xbg2kIrvVGUFZJi6JW3AotnQWKutQK1GRMsYn188Daj7bztfP9kLD9BP0c6cPObONfQwEkV2wmXB4JKf4ZpzWYLuR5Xdj7OGbDKi2klvO0C8IOX12KOSffvNehYGZBzZugZhbUHAWdkn587PA95b98_BWubZvJ</recordid><startdate>20230317</startdate><enddate>20230317</enddate><creator>Li, Jing</creator><creator>Huang, Hsi-Yuan</creator><creator>Lin, Yang-Chi-Dung</creator><creator>Zuo, Huali</creator><creator>Tang, Yun</creator><creator>Huang, Hsien-Da</creator><general>Frontiers Media S.A</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20230317</creationdate><title>Cinnamomi ramulus inhibits cancer cells growth by inducing G2/M arrest</title><author>Li, Jing ; Huang, Hsi-Yuan ; Lin, Yang-Chi-Dung ; Zuo, Huali ; Tang, Yun ; Huang, Hsien-Da</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c420t-9e3070e56803eb54010486112456c40c0da26213efcb55bcb5565e6efaf9d3ab3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>cell cycle</topic><topic>Cinnamomi ramulus</topic><topic>differential expression analysis (DE)</topic><topic>gene set enrichment analysis (GSEA)</topic><topic>Pharmacology</topic><topic>transcriptomic analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Jing</creatorcontrib><creatorcontrib>Huang, Hsi-Yuan</creatorcontrib><creatorcontrib>Lin, Yang-Chi-Dung</creatorcontrib><creatorcontrib>Zuo, Huali</creatorcontrib><creatorcontrib>Tang, Yun</creatorcontrib><creatorcontrib>Huang, Hsien-Da</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Frontiers in pharmacology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Jing</au><au>Huang, Hsi-Yuan</au><au>Lin, Yang-Chi-Dung</au><au>Zuo, Huali</au><au>Tang, Yun</au><au>Huang, Hsien-Da</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Cinnamomi ramulus inhibits cancer cells growth by inducing G2/M arrest</atitle><jtitle>Frontiers in pharmacology</jtitle><addtitle>Front Pharmacol</addtitle><date>2023-03-17</date><risdate>2023</risdate><volume>14</volume><spage>1121799</spage><pages>1121799-</pages><issn>1663-9812</issn><eissn>1663-9812</eissn><abstract>(CR) is one of the most widely used traditional Chinese medicine (TCM) with anti-cancer effects. Analyzing transcriptomic responses of different human cell lines to TCM treatment is a promising approach to understand the unbiased mechanism of TCM.
This study treated ten cancer cell lines with different CR concentrations, followed by mRNA sequencing. Differential expression (DE) analysis and gene set enrichment analysis (GSEA) were utilized to analyze transcriptomic data. Finally, the
screening results were verified by
experiments.
Both DE and GSEA analysis suggested the Cell cycle pathway was the most perturbated pathway by CR across these cell lines. By analyzing the clinical significance and prognosis of G2/M related genes (PLK1, CDK1, CCNB1, and CCNB2) in various cancer tissues, we found that they were up-regulated in most cancer types, and their down-regulation showed better overall survival rates in cancer patients. Finally,
experiments validation on A549, Hep G2, and HeLa cells suggested that CR can inhibit cell growth by suppressing the PLK1/CDK1/ Cyclin B axis.
This is the first study to apply transcriptomic analysis to investigate the cancer cell growth inhibition of CR on various human cancer cell lines. The core effect of CR on ten cancer cell lines is to induce G2/M arrest by inhibiting the PLK1/CDK1/Cyclin B axis.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>37007025</pmid><doi>10.3389/fphar.2023.1121799</doi><oa>free_for_read</oa></addata></record> |
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subjects | cell cycle Cinnamomi ramulus differential expression analysis (DE) gene set enrichment analysis (GSEA) Pharmacology transcriptomic analysis |
title | Cinnamomi ramulus inhibits cancer cells growth by inducing G2/M arrest |
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