Loading…

Comprehensive pan-cancer analysis and the regulatory mechanism of AURKA, a gene associated with prognosis of ferroptosis of adrenal cortical carcinoma in the tumor micro-environment

The only curative option for patients with locally or locally advanced adrenocortical carcinoma is primary tumor curative sexual resection (ACC). However, overall survival remains low, with most deaths occurring within the first 2 years following surgery. The 5-year survival rate after surgery is le...

Full description

Saved in:
Bibliographic Details
Published in:Frontiers in genetics 2023-01, Vol.13, p.996180-996180
Main Authors: Lu, Keqiang, Yuan, Xingxing, Zhao, Lingling, Wang, Bingyu, Zhang, Yali
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c465t-3596851cac0aaa626afac60e01d85c13f812ecebd48f835748768d1a7c1d0ee3
cites cdi_FETCH-LOGICAL-c465t-3596851cac0aaa626afac60e01d85c13f812ecebd48f835748768d1a7c1d0ee3
container_end_page 996180
container_issue
container_start_page 996180
container_title Frontiers in genetics
container_volume 13
creator Lu, Keqiang
Yuan, Xingxing
Zhao, Lingling
Wang, Bingyu
Zhang, Yali
description The only curative option for patients with locally or locally advanced adrenocortical carcinoma is primary tumor curative sexual resection (ACC). However, overall survival remains low, with most deaths occurring within the first 2 years following surgery. The 5-year survival rate after surgery is less than 30%. As a result, more accurate prognosis-related predictive biomarkers must be investigated urgently to detect patients' disease status after surgery. Data from FerrDb were obtained to identify ferroptosis-related genes, and ACC gene expression profiles were collected from the GEO database to find differentially expressed ACC ferroptosis-related genes using differential expression analysis. The DEFGs were subjected to Gene Ontology gene enrichment analysis and KEGG signaling pathway enrichment analysis. PPI network building and predictive analysis were used to filter core genes. The expression of critical genes in ACC pathological stage and pan-cancer was then investigated. In recent years, immune-related factors, DNA repair genes, and methyltransferase genes have been employed in diagnosing and prognosis of different malignancies. Cancer cells are mutated due to DNA repair genes, and highly expressed DNA repair genes promote cancer. Dysregulation of methyltransferase genes and Immune-related factors, which are shown to be significantly expressed in numerous malignancies, also plays a crucial role in cancer. As a result, we investigated the relationship of AURKA with immunological checkpoints, DNA repair genes, and methyltransferases in pan-cancer. The DEGs found in the GEO database were crossed with ferroptosis-related genes, yielding 42 differentially expressed ferroptosis-related genes. Six of these 42 genes, particularly AURKA, are linked to the prognosis of ACC. AURKA expression was significantly correlated with poor prognosis in patients with multiple cancers, and there was a significant positive correlation with Th2 cells. Furthermore, AURKA expression was positively associated with tumor immune infiltration in Lung adenocarcinoma (LUAD), Liver hepatocellular carcinoma (LIHC), Sarcoma (SARC), Esophageal carcinoma (ESCA), and Stomach adenocarcinoma (STAD), but negatively correlated with the immune score, matrix score, and calculated score in these tumors. Further investigation into the relationship between AURKA expression and immune examination gene expression revealed that AURKA could control the tumor-resistant pattern in most tumors by regulat
doi_str_mv 10.3389/fgene.2022.996180
format article
fullrecord <record><control><sourceid>proquest_doaj_</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_46658e13c2b14b06a5af7d005213c70c</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_46658e13c2b14b06a5af7d005213c70c</doaj_id><sourcerecordid>2768814295</sourcerecordid><originalsourceid>FETCH-LOGICAL-c465t-3596851cac0aaa626afac60e01d85c13f812ecebd48f835748768d1a7c1d0ee3</originalsourceid><addsrcrecordid>eNpVks9u1DAQxiMEolXpA3BBPnIgi__EXueCtFpBW1EJCZWzNetMsq4SO9jZrfbBeD-c3bZqffF4PPObz9ZXFB8ZXQih669thx4XnHK-qGvFNH1TnDOlqlJTzt6-iM-Ky5TuaV5VLYSo3hdnQikta8nPi3_rMIwRt-iT2yMZwZcWvMVIwEN_SC7loCHTFknEbtfDFOKBDGi34F0aSGjJ6s_vn6svBMgsiEBKwTqYsCEPbtqSMYbOh5mTS1uMMYzT0xGaiHkKsSFOzs4BROt8GIA4f5w57YYQyeBsDCX6vYvBD-inD8W7FvqEl4_7RXH34_vd-rq8_XV1s17dlrZSciqFrPM7mQVLAUBxBS1YRZGyRkvLRKsZR4ubptKtFnJZ6aXSDYOlZQ1FFBfFzQnbBLg3Y3QDxIMJ4MwxEWJnYFbeo6mUkhqZsHzDqg1VIKFdNpRKnnNLajPr24k17jYDNja_IkL_Cvr6xrut6cLe1LqSopYZ8PkREMPfHabJDC5Z7HvwGHbJ8Kxds4ofS9mpNH9bShHb5zGMmtk85mgeM5vHnMyTez691Pfc8WQV8R8658ZP</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2768814295</pqid></control><display><type>article</type><title>Comprehensive pan-cancer analysis and the regulatory mechanism of AURKA, a gene associated with prognosis of ferroptosis of adrenal cortical carcinoma in the tumor micro-environment</title><source>PubMed Central</source><creator>Lu, Keqiang ; Yuan, Xingxing ; Zhao, Lingling ; Wang, Bingyu ; Zhang, Yali</creator><creatorcontrib>Lu, Keqiang ; Yuan, Xingxing ; Zhao, Lingling ; Wang, Bingyu ; Zhang, Yali</creatorcontrib><description>The only curative option for patients with locally or locally advanced adrenocortical carcinoma is primary tumor curative sexual resection (ACC). However, overall survival remains low, with most deaths occurring within the first 2 years following surgery. The 5-year survival rate after surgery is less than 30%. As a result, more accurate prognosis-related predictive biomarkers must be investigated urgently to detect patients' disease status after surgery. Data from FerrDb were obtained to identify ferroptosis-related genes, and ACC gene expression profiles were collected from the GEO database to find differentially expressed ACC ferroptosis-related genes using differential expression analysis. The DEFGs were subjected to Gene Ontology gene enrichment analysis and KEGG signaling pathway enrichment analysis. PPI network building and predictive analysis were used to filter core genes. The expression of critical genes in ACC pathological stage and pan-cancer was then investigated. In recent years, immune-related factors, DNA repair genes, and methyltransferase genes have been employed in diagnosing and prognosis of different malignancies. Cancer cells are mutated due to DNA repair genes, and highly expressed DNA repair genes promote cancer. Dysregulation of methyltransferase genes and Immune-related factors, which are shown to be significantly expressed in numerous malignancies, also plays a crucial role in cancer. As a result, we investigated the relationship of AURKA with immunological checkpoints, DNA repair genes, and methyltransferases in pan-cancer. The DEGs found in the GEO database were crossed with ferroptosis-related genes, yielding 42 differentially expressed ferroptosis-related genes. Six of these 42 genes, particularly AURKA, are linked to the prognosis of ACC. AURKA expression was significantly correlated with poor prognosis in patients with multiple cancers, and there was a significant positive correlation with Th2 cells. Furthermore, AURKA expression was positively associated with tumor immune infiltration in Lung adenocarcinoma (LUAD), Liver hepatocellular carcinoma (LIHC), Sarcoma (SARC), Esophageal carcinoma (ESCA), and Stomach adenocarcinoma (STAD), but negatively correlated with the immune score, matrix score, and calculated score in these tumors. Further investigation into the relationship between AURKA expression and immune examination gene expression revealed that AURKA could control the tumor-resistant pattern in most tumors by regulating the expression level of specific immune examination genes. AURKA may be an independent prognostic marker for predicting ACC patient prognosis. AURKA may play an essential role in the tumor microenvironment and tumor immunity, according to a pan-cancer analysis, and it has the potential to be a predictive biomarker for multiple cancers.</description><identifier>ISSN: 1664-8021</identifier><identifier>EISSN: 1664-8021</identifier><identifier>DOI: 10.3389/fgene.2022.996180</identifier><identifier>PMID: 36685952</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>AURKA ; ferroptosis ; Genetics ; pan-cancer analysis ; regulatory mechanism ; tumor micro-environment</subject><ispartof>Frontiers in genetics, 2023-01, Vol.13, p.996180-996180</ispartof><rights>Copyright © 2023 Lu, Yuan, Zhao, Wang and Zhang.</rights><rights>Copyright © 2023 Lu, Yuan, Zhao, Wang and Zhang. 2023 Lu, Yuan, Zhao, Wang and Zhang</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c465t-3596851cac0aaa626afac60e01d85c13f812ecebd48f835748768d1a7c1d0ee3</citedby><cites>FETCH-LOGICAL-c465t-3596851cac0aaa626afac60e01d85c13f812ecebd48f835748768d1a7c1d0ee3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9845395/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9845395/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36685952$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lu, Keqiang</creatorcontrib><creatorcontrib>Yuan, Xingxing</creatorcontrib><creatorcontrib>Zhao, Lingling</creatorcontrib><creatorcontrib>Wang, Bingyu</creatorcontrib><creatorcontrib>Zhang, Yali</creatorcontrib><title>Comprehensive pan-cancer analysis and the regulatory mechanism of AURKA, a gene associated with prognosis of ferroptosis of adrenal cortical carcinoma in the tumor micro-environment</title><title>Frontiers in genetics</title><addtitle>Front Genet</addtitle><description>The only curative option for patients with locally or locally advanced adrenocortical carcinoma is primary tumor curative sexual resection (ACC). However, overall survival remains low, with most deaths occurring within the first 2 years following surgery. The 5-year survival rate after surgery is less than 30%. As a result, more accurate prognosis-related predictive biomarkers must be investigated urgently to detect patients' disease status after surgery. Data from FerrDb were obtained to identify ferroptosis-related genes, and ACC gene expression profiles were collected from the GEO database to find differentially expressed ACC ferroptosis-related genes using differential expression analysis. The DEFGs were subjected to Gene Ontology gene enrichment analysis and KEGG signaling pathway enrichment analysis. PPI network building and predictive analysis were used to filter core genes. The expression of critical genes in ACC pathological stage and pan-cancer was then investigated. In recent years, immune-related factors, DNA repair genes, and methyltransferase genes have been employed in diagnosing and prognosis of different malignancies. Cancer cells are mutated due to DNA repair genes, and highly expressed DNA repair genes promote cancer. Dysregulation of methyltransferase genes and Immune-related factors, which are shown to be significantly expressed in numerous malignancies, also plays a crucial role in cancer. As a result, we investigated the relationship of AURKA with immunological checkpoints, DNA repair genes, and methyltransferases in pan-cancer. The DEGs found in the GEO database were crossed with ferroptosis-related genes, yielding 42 differentially expressed ferroptosis-related genes. Six of these 42 genes, particularly AURKA, are linked to the prognosis of ACC. AURKA expression was significantly correlated with poor prognosis in patients with multiple cancers, and there was a significant positive correlation with Th2 cells. Furthermore, AURKA expression was positively associated with tumor immune infiltration in Lung adenocarcinoma (LUAD), Liver hepatocellular carcinoma (LIHC), Sarcoma (SARC), Esophageal carcinoma (ESCA), and Stomach adenocarcinoma (STAD), but negatively correlated with the immune score, matrix score, and calculated score in these tumors. Further investigation into the relationship between AURKA expression and immune examination gene expression revealed that AURKA could control the tumor-resistant pattern in most tumors by regulating the expression level of specific immune examination genes. AURKA may be an independent prognostic marker for predicting ACC patient prognosis. AURKA may play an essential role in the tumor microenvironment and tumor immunity, according to a pan-cancer analysis, and it has the potential to be a predictive biomarker for multiple cancers.</description><subject>AURKA</subject><subject>ferroptosis</subject><subject>Genetics</subject><subject>pan-cancer analysis</subject><subject>regulatory mechanism</subject><subject>tumor micro-environment</subject><issn>1664-8021</issn><issn>1664-8021</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVks9u1DAQxiMEolXpA3BBPnIgi__EXueCtFpBW1EJCZWzNetMsq4SO9jZrfbBeD-c3bZqffF4PPObz9ZXFB8ZXQih669thx4XnHK-qGvFNH1TnDOlqlJTzt6-iM-Ky5TuaV5VLYSo3hdnQikta8nPi3_rMIwRt-iT2yMZwZcWvMVIwEN_SC7loCHTFknEbtfDFOKBDGi34F0aSGjJ6s_vn6svBMgsiEBKwTqYsCEPbtqSMYbOh5mTS1uMMYzT0xGaiHkKsSFOzs4BROt8GIA4f5w57YYQyeBsDCX6vYvBD-inD8W7FvqEl4_7RXH34_vd-rq8_XV1s17dlrZSciqFrPM7mQVLAUBxBS1YRZGyRkvLRKsZR4ubptKtFnJZ6aXSDYOlZQ1FFBfFzQnbBLg3Y3QDxIMJ4MwxEWJnYFbeo6mUkhqZsHzDqg1VIKFdNpRKnnNLajPr24k17jYDNja_IkL_Cvr6xrut6cLe1LqSopYZ8PkREMPfHabJDC5Z7HvwGHbJ8Kxds4ofS9mpNH9bShHb5zGMmtk85mgeM5vHnMyTez691Pfc8WQV8R8658ZP</recordid><startdate>20230104</startdate><enddate>20230104</enddate><creator>Lu, Keqiang</creator><creator>Yuan, Xingxing</creator><creator>Zhao, Lingling</creator><creator>Wang, Bingyu</creator><creator>Zhang, Yali</creator><general>Frontiers Media S.A</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20230104</creationdate><title>Comprehensive pan-cancer analysis and the regulatory mechanism of AURKA, a gene associated with prognosis of ferroptosis of adrenal cortical carcinoma in the tumor micro-environment</title><author>Lu, Keqiang ; Yuan, Xingxing ; Zhao, Lingling ; Wang, Bingyu ; Zhang, Yali</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c465t-3596851cac0aaa626afac60e01d85c13f812ecebd48f835748768d1a7c1d0ee3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>AURKA</topic><topic>ferroptosis</topic><topic>Genetics</topic><topic>pan-cancer analysis</topic><topic>regulatory mechanism</topic><topic>tumor micro-environment</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lu, Keqiang</creatorcontrib><creatorcontrib>Yuan, Xingxing</creatorcontrib><creatorcontrib>Zhao, Lingling</creatorcontrib><creatorcontrib>Wang, Bingyu</creatorcontrib><creatorcontrib>Zhang, Yali</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Frontiers in genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lu, Keqiang</au><au>Yuan, Xingxing</au><au>Zhao, Lingling</au><au>Wang, Bingyu</au><au>Zhang, Yali</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comprehensive pan-cancer analysis and the regulatory mechanism of AURKA, a gene associated with prognosis of ferroptosis of adrenal cortical carcinoma in the tumor micro-environment</atitle><jtitle>Frontiers in genetics</jtitle><addtitle>Front Genet</addtitle><date>2023-01-04</date><risdate>2023</risdate><volume>13</volume><spage>996180</spage><epage>996180</epage><pages>996180-996180</pages><issn>1664-8021</issn><eissn>1664-8021</eissn><abstract>The only curative option for patients with locally or locally advanced adrenocortical carcinoma is primary tumor curative sexual resection (ACC). However, overall survival remains low, with most deaths occurring within the first 2 years following surgery. The 5-year survival rate after surgery is less than 30%. As a result, more accurate prognosis-related predictive biomarkers must be investigated urgently to detect patients' disease status after surgery. Data from FerrDb were obtained to identify ferroptosis-related genes, and ACC gene expression profiles were collected from the GEO database to find differentially expressed ACC ferroptosis-related genes using differential expression analysis. The DEFGs were subjected to Gene Ontology gene enrichment analysis and KEGG signaling pathway enrichment analysis. PPI network building and predictive analysis were used to filter core genes. The expression of critical genes in ACC pathological stage and pan-cancer was then investigated. In recent years, immune-related factors, DNA repair genes, and methyltransferase genes have been employed in diagnosing and prognosis of different malignancies. Cancer cells are mutated due to DNA repair genes, and highly expressed DNA repair genes promote cancer. Dysregulation of methyltransferase genes and Immune-related factors, which are shown to be significantly expressed in numerous malignancies, also plays a crucial role in cancer. As a result, we investigated the relationship of AURKA with immunological checkpoints, DNA repair genes, and methyltransferases in pan-cancer. The DEGs found in the GEO database were crossed with ferroptosis-related genes, yielding 42 differentially expressed ferroptosis-related genes. Six of these 42 genes, particularly AURKA, are linked to the prognosis of ACC. AURKA expression was significantly correlated with poor prognosis in patients with multiple cancers, and there was a significant positive correlation with Th2 cells. Furthermore, AURKA expression was positively associated with tumor immune infiltration in Lung adenocarcinoma (LUAD), Liver hepatocellular carcinoma (LIHC), Sarcoma (SARC), Esophageal carcinoma (ESCA), and Stomach adenocarcinoma (STAD), but negatively correlated with the immune score, matrix score, and calculated score in these tumors. Further investigation into the relationship between AURKA expression and immune examination gene expression revealed that AURKA could control the tumor-resistant pattern in most tumors by regulating the expression level of specific immune examination genes. AURKA may be an independent prognostic marker for predicting ACC patient prognosis. AURKA may play an essential role in the tumor microenvironment and tumor immunity, according to a pan-cancer analysis, and it has the potential to be a predictive biomarker for multiple cancers.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>36685952</pmid><doi>10.3389/fgene.2022.996180</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1664-8021
ispartof Frontiers in genetics, 2023-01, Vol.13, p.996180-996180
issn 1664-8021
1664-8021
language eng
recordid cdi_doaj_primary_oai_doaj_org_article_46658e13c2b14b06a5af7d005213c70c
source PubMed Central
subjects AURKA
ferroptosis
Genetics
pan-cancer analysis
regulatory mechanism
tumor micro-environment
title Comprehensive pan-cancer analysis and the regulatory mechanism of AURKA, a gene associated with prognosis of ferroptosis of adrenal cortical carcinoma in the tumor micro-environment
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-29T03%3A08%3A27IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_doaj_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Comprehensive%20pan-cancer%20analysis%20and%20the%20regulatory%20mechanism%20of%20AURKA,%20a%20gene%20associated%20with%20prognosis%20of%20ferroptosis%20of%20adrenal%20cortical%20carcinoma%20in%20the%20tumor%20micro-environment&rft.jtitle=Frontiers%20in%20genetics&rft.au=Lu,%20Keqiang&rft.date=2023-01-04&rft.volume=13&rft.spage=996180&rft.epage=996180&rft.pages=996180-996180&rft.issn=1664-8021&rft.eissn=1664-8021&rft_id=info:doi/10.3389/fgene.2022.996180&rft_dat=%3Cproquest_doaj_%3E2768814295%3C/proquest_doaj_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c465t-3596851cac0aaa626afac60e01d85c13f812ecebd48f835748768d1a7c1d0ee3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2768814295&rft_id=info:pmid/36685952&rfr_iscdi=true