Characterization of the First Cultured Psychrotolerant Representative of Legionella from Antarctica Reveals Its Unique Genome Structure

• Published in: Microbiology spectrum 2021-10, Vol.9 (2), p.e0042421-e0042421
• Main Authors: Shimada, Sho, Nakai, Ryosuke, Aoki, Kotaro, Kudoh, Sakae, Imura, Satoshi, Shimoeda, Norifumi, Ohno, Giichiro, Watanabe, Kentaro, Miyazaki, Yasunari, Ishii, Yoshikazu, Tateda, Kazuhiro
• Format: Article
• Language: English
• Subjects: Antarctic Regions; Bacterial Typing Techniques; cellular fatty acids; Cold Temperature; comparative genomic analysis; DNA, Bacterial - genetics; Evolution; Fatty Acids - metabolism; Genome, Bacterial; Genomics; horizontal gene transfer; insertion sequence; Interspersed Repetitive Sequences; Lakes - chemistry; Lakes - microbiology; Legionella; Legionella - classification; Legionella - genetics; Legionella - isolation & purification; Legionella - metabolism; Phylogeny; psychrotolerant; Research Article; RNA, Ribosomal, 16S - genetics
• ISSN: 2165-0497; 2165-0497
• DOI: 10.1128/Spectrum.00424-21

Culture-independent analysis shows that spp. inhabit a wide range of low-temperature environments, but to date, no psychrotolerant or psychrophilic strains have been reported. Here, we characterized the first cultivated psychrotolerant representative, designated strain TUM19329 , isolated from an Antarctic lake using a polyphasic approach and comparative genomic analysis. A genome-wide phylogenetic tree indicated that this strain was phylogenetically separate at the species level. Strain TUM19329 shared common physiological traits (e.g., Gram-negative, limited growth on buffered charcoal-yeast extract α-ketoglutarate [BCYEα] agar with l-cysteine requirements) with its relatives, but it also showed psychrotolerant growth properties (e.g., growth at 4°C to 25°C). Moreover, this strain altered its own cellular fatty acid composition to accumulate unsaturated fatty acid at a lower temperature, which may help maintain the cell membrane fluidity. Through comparative genomic analysis, we found that this strain possessed massive mobile genetic elements compared with other species, amounting to up to 17% of the total genes. The majority of the elements were the result of the spread of only a few insertion sequences (ISs), which were spread throughout the genome by a "copy-and-paste" mechanism. Furthermore, we found metabolic genes, such as fatty acid synthesis-related genes, acquired by horizontal gene transfer (HGT). The expansion of ISs and HGT events may play a major role in shaping the phenotype and physiology of this strain. On the basis of the features presented here, we propose a new species-Legionella antarctica sp. nov.-represented by strain TUM19329 (= GTC 22699 = NCTC 14581 ). This study characterized a unique cultivated representative of the genus isolated from an Antarctic lake. This psychrotolerant strain had some common properties of known species but also displayed other characteristics, such as plasticity in fatty acid composition and an enrichment of mobile genes in the genome. These remarkable properties, as well as other factors, may contribute to cold hardiness, and this first cultivated cold-tolerant strain of the genus may serve as a model bacterium for further studies. It is worth noting that environmentally derived 16S rRNA gene phylotypes closely related to the strain characterized here have been detected from diverse environments outside Antarctica, suggesting a wide distribution of psychrotolerant bacteria. Our culture- and genome-based