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An Efficient and Robust Method for Chest X-ray Rib Suppression That Improves Pulmonary Abnormality Diagnosis
Suppression of thoracic bone shadows on chest X-rays (CXRs) can improve the diagnosis of pulmonary disease. Previous approaches can be categorized as either unsupervised physical models or supervised deep learning models. Physical models can remove the entire ribcage and preserve the morphological l...
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Published in: | Diagnostics (Basel) 2023-05, Vol.13 (9), p.1652 |
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description | Suppression of thoracic bone shadows on chest X-rays (CXRs) can improve the diagnosis of pulmonary disease. Previous approaches can be categorized as either unsupervised physical models or supervised deep learning models. Physical models can remove the entire ribcage and preserve the morphological lung details but are impractical due to the extremely long processing time. Machine learning (ML) methods are computationally efficient but are limited by the available ground truth (GT) for effective and robust training, resulting in suboptimal results.
To improve bone shadow suppression, we propose a generalizable yet efficient workflow for CXR rib suppression by combining physical and ML methods.
Our pipeline consists of two stages: (1) pair generation with GT bone shadows eliminated by a physical model in spatially transformed gradient fields; and (2) a fully supervised image denoising network trained on stage-one datasets for fast rib removal from incoming CXRs. For stage two, we designed a densely connected network called SADXNet, combined with a peak signal-to-noise ratio and a multi-scale structure similarity index measure as the loss function to suppress the bony structures. SADXNet organizes the spatial filters in a U shape and preserves the feature map dimension throughout the network flow.
Visually, SADXNet can suppress the rib edges near the lung wall/vertebra without compromising the vessel/abnormality conspicuity. Quantitively, it achieves an RMSE of ~0 compared with the physical model generated GTs, during testing with one prediction in |
doi_str_mv | 10.3390/diagnostics13091652 |
format | article |
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To improve bone shadow suppression, we propose a generalizable yet efficient workflow for CXR rib suppression by combining physical and ML methods.
Our pipeline consists of two stages: (1) pair generation with GT bone shadows eliminated by a physical model in spatially transformed gradient fields; and (2) a fully supervised image denoising network trained on stage-one datasets for fast rib removal from incoming CXRs. For stage two, we designed a densely connected network called SADXNet, combined with a peak signal-to-noise ratio and a multi-scale structure similarity index measure as the loss function to suppress the bony structures. SADXNet organizes the spatial filters in a U shape and preserves the feature map dimension throughout the network flow.
Visually, SADXNet can suppress the rib edges near the lung wall/vertebra without compromising the vessel/abnormality conspicuity. Quantitively, it achieves an RMSE of ~0 compared with the physical model generated GTs, during testing with one prediction in <1 s. Downstream tasks, including lung nodule detection as well as common lung disease classification and localization, are used to provide task-specific evaluations of our rib suppression mechanism. We observed a 3.23% and 6.62% AUC increase, as well as 203 (1273 to 1070) and 385 (3029 to 2644) absolute false positive decreases for lung nodule detection and common lung disease localization, respectively.
Through learning from image pairs generated from the physical model, the proposed SADXNet can make a robust sub-second prediction without losing fidelity. Quantitative outcomes from downstream validation further underpin the superiority of SADXNet and the training ML-based rib suppression approaches from the physical model yielded dataset. The training images and SADXNet are provided in the manuscript.</description><identifier>ISSN: 2075-4418</identifier><identifier>EISSN: 2075-4418</identifier><identifier>DOI: 10.3390/diagnostics13091652</identifier><identifier>PMID: 37175044</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>chest X-rays ; computer aided diagnosis ; Datasets ; deep learning ; Energy ; Machine learning ; Methods ; rib suppression ; Signal processing</subject><ispartof>Diagnostics (Basel), 2023-05, Vol.13 (9), p.1652</ispartof><rights>COPYRIGHT 2023 MDPI AG</rights><rights>2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 by the authors. 2023</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c567t-7d1bde3067e6473205985f51e77fcbe82abe2ffdcb6d445ef217bc46a56bbfa63</citedby><cites>FETCH-LOGICAL-c567t-7d1bde3067e6473205985f51e77fcbe82abe2ffdcb6d445ef217bc46a56bbfa63</cites><orcidid>0000-0002-7155-9552 ; 0000-0002-6696-5409</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2812386942/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2812386942?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37175044$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xu, Di</creatorcontrib><creatorcontrib>Xu, Qifan</creatorcontrib><creatorcontrib>Nhieu, Kevin</creatorcontrib><creatorcontrib>Ruan, Dan</creatorcontrib><creatorcontrib>Sheng, Ke</creatorcontrib><title>An Efficient and Robust Method for Chest X-ray Rib Suppression That Improves Pulmonary Abnormality Diagnosis</title><title>Diagnostics (Basel)</title><addtitle>Diagnostics (Basel)</addtitle><description>Suppression of thoracic bone shadows on chest X-rays (CXRs) can improve the diagnosis of pulmonary disease. Previous approaches can be categorized as either unsupervised physical models or supervised deep learning models. Physical models can remove the entire ribcage and preserve the morphological lung details but are impractical due to the extremely long processing time. Machine learning (ML) methods are computationally efficient but are limited by the available ground truth (GT) for effective and robust training, resulting in suboptimal results.
To improve bone shadow suppression, we propose a generalizable yet efficient workflow for CXR rib suppression by combining physical and ML methods.
Our pipeline consists of two stages: (1) pair generation with GT bone shadows eliminated by a physical model in spatially transformed gradient fields; and (2) a fully supervised image denoising network trained on stage-one datasets for fast rib removal from incoming CXRs. For stage two, we designed a densely connected network called SADXNet, combined with a peak signal-to-noise ratio and a multi-scale structure similarity index measure as the loss function to suppress the bony structures. SADXNet organizes the spatial filters in a U shape and preserves the feature map dimension throughout the network flow.
Visually, SADXNet can suppress the rib edges near the lung wall/vertebra without compromising the vessel/abnormality conspicuity. Quantitively, it achieves an RMSE of ~0 compared with the physical model generated GTs, during testing with one prediction in <1 s. Downstream tasks, including lung nodule detection as well as common lung disease classification and localization, are used to provide task-specific evaluations of our rib suppression mechanism. We observed a 3.23% and 6.62% AUC increase, as well as 203 (1273 to 1070) and 385 (3029 to 2644) absolute false positive decreases for lung nodule detection and common lung disease localization, respectively.
Through learning from image pairs generated from the physical model, the proposed SADXNet can make a robust sub-second prediction without losing fidelity. Quantitative outcomes from downstream validation further underpin the superiority of SADXNet and the training ML-based rib suppression approaches from the physical model yielded dataset. The training images and SADXNet are provided in the manuscript.</description><subject>chest X-rays</subject><subject>computer aided diagnosis</subject><subject>Datasets</subject><subject>deep learning</subject><subject>Energy</subject><subject>Machine learning</subject><subject>Methods</subject><subject>rib suppression</subject><subject>Signal processing</subject><issn>2075-4418</issn><issn>2075-4418</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNptUl1rFDEUHUSxpfYXCBLwxZet-c7MkyzbqgsVpVbwLeRzN8tMsiYzhf33Zt1au9LkIeHmnJNzD7dpXiN4QUgH39ugVjGVMZiCCOwQZ_hZc4qhYDNKUfv80f2kOS9lA-vqEGkxe9mcEIEEg5SeNv08givvgwkujkBFC26SnsoIvrhxnSzwKYPF2tXCz1lWO3ATNPg-bbfZlRJSBLdrNYLlsM3pzhXwbeqHFFXegbmOKQ-qD-MOXB68hvKqeeFVX9z5_XnW_Ph4dbv4PLv--mm5mF_PDONinAmLtHUEcuE4FQRD1rXMM-SE8Ea7FivtsPfWaG4pZc5jJLShXDGutVecnDXLg65NaiO3OQzVkkwqyD-FlFdS5Rpd7yTttDKeecc7RZ3tlMPcCKSxaHnH2F7rw0FrO-nBWVNjyqo_Ej1-iWEtV-lOIohEFUFV4d29Qk6_phqlHEIxru9VdGkqEreIME4xJRX69j_oJk051qz2KEyqJ4r_oVaqdhCiT_VjsxeVc0E72PG23Ru_eAJVt3VDMCk6H2r9iEAOBJNTKdn5hyYRlPuhk08MXWW9eZzPA-fviJHfo_rV6Q</recordid><startdate>20230508</startdate><enddate>20230508</enddate><creator>Xu, Di</creator><creator>Xu, Qifan</creator><creator>Nhieu, Kevin</creator><creator>Ruan, Dan</creator><creator>Sheng, Ke</creator><general>MDPI AG</general><general>MDPI</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-7155-9552</orcidid><orcidid>https://orcid.org/0000-0002-6696-5409</orcidid></search><sort><creationdate>20230508</creationdate><title>An Efficient and Robust Method for Chest X-ray Rib Suppression That Improves Pulmonary Abnormality Diagnosis</title><author>Xu, Di ; Xu, Qifan ; Nhieu, Kevin ; Ruan, Dan ; Sheng, Ke</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c567t-7d1bde3067e6473205985f51e77fcbe82abe2ffdcb6d445ef217bc46a56bbfa63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>chest X-rays</topic><topic>computer aided diagnosis</topic><topic>Datasets</topic><topic>deep learning</topic><topic>Energy</topic><topic>Machine learning</topic><topic>Methods</topic><topic>rib suppression</topic><topic>Signal processing</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xu, Di</creatorcontrib><creatorcontrib>Xu, Qifan</creatorcontrib><creatorcontrib>Nhieu, Kevin</creatorcontrib><creatorcontrib>Ruan, Dan</creatorcontrib><creatorcontrib>Sheng, Ke</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library (ProQuest Database)</collection><collection>Research Library (Corporate)</collection><collection>Publicly Available Content Database (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Diagnostics (Basel)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xu, Di</au><au>Xu, Qifan</au><au>Nhieu, Kevin</au><au>Ruan, Dan</au><au>Sheng, Ke</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>An Efficient and Robust Method for Chest X-ray Rib Suppression That Improves Pulmonary Abnormality Diagnosis</atitle><jtitle>Diagnostics (Basel)</jtitle><addtitle>Diagnostics (Basel)</addtitle><date>2023-05-08</date><risdate>2023</risdate><volume>13</volume><issue>9</issue><spage>1652</spage><pages>1652-</pages><issn>2075-4418</issn><eissn>2075-4418</eissn><abstract>Suppression of thoracic bone shadows on chest X-rays (CXRs) can improve the diagnosis of pulmonary disease. Previous approaches can be categorized as either unsupervised physical models or supervised deep learning models. Physical models can remove the entire ribcage and preserve the morphological lung details but are impractical due to the extremely long processing time. Machine learning (ML) methods are computationally efficient but are limited by the available ground truth (GT) for effective and robust training, resulting in suboptimal results.
To improve bone shadow suppression, we propose a generalizable yet efficient workflow for CXR rib suppression by combining physical and ML methods.
Our pipeline consists of two stages: (1) pair generation with GT bone shadows eliminated by a physical model in spatially transformed gradient fields; and (2) a fully supervised image denoising network trained on stage-one datasets for fast rib removal from incoming CXRs. For stage two, we designed a densely connected network called SADXNet, combined with a peak signal-to-noise ratio and a multi-scale structure similarity index measure as the loss function to suppress the bony structures. SADXNet organizes the spatial filters in a U shape and preserves the feature map dimension throughout the network flow.
Visually, SADXNet can suppress the rib edges near the lung wall/vertebra without compromising the vessel/abnormality conspicuity. Quantitively, it achieves an RMSE of ~0 compared with the physical model generated GTs, during testing with one prediction in <1 s. Downstream tasks, including lung nodule detection as well as common lung disease classification and localization, are used to provide task-specific evaluations of our rib suppression mechanism. We observed a 3.23% and 6.62% AUC increase, as well as 203 (1273 to 1070) and 385 (3029 to 2644) absolute false positive decreases for lung nodule detection and common lung disease localization, respectively.
Through learning from image pairs generated from the physical model, the proposed SADXNet can make a robust sub-second prediction without losing fidelity. Quantitative outcomes from downstream validation further underpin the superiority of SADXNet and the training ML-based rib suppression approaches from the physical model yielded dataset. The training images and SADXNet are provided in the manuscript.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>37175044</pmid><doi>10.3390/diagnostics13091652</doi><orcidid>https://orcid.org/0000-0002-7155-9552</orcidid><orcidid>https://orcid.org/0000-0002-6696-5409</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | chest X-rays computer aided diagnosis Datasets deep learning Energy Machine learning Methods rib suppression Signal processing |
title | An Efficient and Robust Method for Chest X-ray Rib Suppression That Improves Pulmonary Abnormality Diagnosis |
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