Modeling and optimizing in vitro percentage and speed callus induction of carrot via Multilayer Perceptron-Single point discrete GA and radial basis function

• Published in: BMC biotechnology 2022-11, Vol.22 (1), p.34-34, Article 34
• Main Authors: Fallah Ziarani, Masoumeh, Tohidfar, Masoud, Navvabi, Mohammad
• Format: Article
• Language: English
• Subjects: 2,4-D; Algorithms; Artificial Intelligence; Artificial neural network; Callus; Carrot; Carrots; Daucus carota; Embryogenesis; Embryonic growth stage; Explants; Genetic algorithms; Genetic aspects; Genetic engineering; Growth; Growth regulators; Machine learning; Methods; Micropropagation; Multilayer perceptrons; Neural networks; Neural Networks, Computer; Optimization; Perceptron-Single point discrete GA model; Plant growth; Plant Growth Regulators - pharmacology; Plant Leaves; Plant tissue culture; Plant tissues; Radial basis function; Sampling; Seeds; Sensitivity analysis; Tissue culture; Vaccines
• ISSN: 1472-6750; 1472-6750
• DOI: 10.1186/s12896-022-00764-4

Callus induction is the first step in optimizing plant regeneration. Fit embryogenesis and shooting rely on callus induction. In addition, using artificial intelligence models in combination with an algorithm can be helpful in the optimization of in vitro culture. The present study aimed to evaluate the percentage and speed of callus induction optimization in carrot with a Multilayer Perceptron-Single point discrete genetic algorithm (GA). In this study, the outputs included callus induction percentage and speed, while inputs were different types and concentrations of plant growth regulator (0. 5, 0.2 mg/l 2,4-D, 0.3, 0.2, 0.5 mg/l BAP, 1, 0.2 mg/l Kin, and 2 mg/l NAA), different explants (shoot, root, leaf, and nodal), a different concentration compound of MS medium (1 × MS, 4× MS, and 8× MS) and time of sampling. The data were obtained in the laboratory, and multilayer perceptron (MLP) and radial basis function (RBF), two well-known ANNs, were employed to model. Then, GA was used for optimization, and sensitivity analysis was performed to indicate the inputs' importance. The results showed that MLP had better prediction efficiency than RBF. Based on the results, R in training and testing data was 95 and 95% for the percentage of callus induction, while it was 94 and 95% for the speed of callus induction, respectively. In addition, a concentration compound of MS had high sensitivity, while times of sampling had low sensitivity. Based on the MLP-Single point discrete GA, the best results were obtained for shoot explants, 1× MS media, and 0.5 mg/l 2, 4-D + 0.5 mg/l BAP. Further, a non-significant difference was observed between the test result and predicted MLP. Generally, MLP-Single point discrete GA is considered a potent tool for predicting treatment and fit model results used in plant tissue culture and selecting the best medium for callus induction.