Diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect

We evaluated the microbial diversity and metabolome profile of an uncommon hypersaline elastic microbial mat from Cuatro Ciénegas Basin (CCB) in the Chihuahuan Desert of Coahuila, México. We collected ten samples on a small scale transect (1.5-m) and described its microbial diversity through NGS-bas...

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Published in:PeerJ (San Francisco, CA) CA), 2022-06, Vol.10, p.e13579-e13579, Article e13579
Main Authors: Espinosa-Asuar, Laura, Monroy-Guzmán, Camila, Madrigal-Trejo, David, Navarro-Miranda, Marisol, Sánchez-Pérez, Jazmin, Buenrostro Muñoz, Jhoselinne, Villar, Juan, Cifuentes Camargo, Julián Felipe, Kalambokidis, Maria, Esquivel-Hernandez, Diego A, Viladomat Jasso, Mariette, Escalante, Ana E, Velez, Patricia, Figueroa, Mario, Martinez-Cardenas, Anahi, Ramirez-Barahona, Santiago, Gasca-Pineda, Jaime, Eguiarte, Luis E, Souza, Valeria
Format: Article
Language:English
Subjects:
Analysis
Biodiversity
Biogeography
Bioinformatics
Biosphere
Classification
Cuatro Ciénegas Coahuila
DNA, Ribosomal
Ecology
Environment
Flat panel displays
Geographical distribution
Metabolites
Metabolome analysis
Mexico
Microbial communities
Microbiology
Phylogenetic diversity
Phylogenetics
Phylogeny
Rare biosphere
rRNA 16S
Salinity
Seasons
Taxonomy
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cited_by cdi_FETCH-LOGICAL-c503t-265eac1574e4a5929e470351107b6d382356da483344661a34e91efa3447aaf93
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container_title PeerJ (San Francisco, CA)
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creator Espinosa-Asuar, Laura
Monroy-Guzmán, Camila
Madrigal-Trejo, David
Navarro-Miranda, Marisol
Sánchez-Pérez, Jazmin
Buenrostro Muñoz, Jhoselinne
Villar, Juan
Cifuentes Camargo, Julián Felipe
Kalambokidis, Maria
Esquivel-Hernandez, Diego A
Viladomat Jasso, Mariette
Escalante, Ana E
Velez, Patricia
Figueroa, Mario
Martinez-Cardenas, Anahi
Ramirez-Barahona, Santiago
Gasca-Pineda, Jaime
Eguiarte, Luis E
Souza, Valeria
description We evaluated the microbial diversity and metabolome profile of an uncommon hypersaline elastic microbial mat from Cuatro Ciénegas Basin (CCB) in the Chihuahuan Desert of Coahuila, México. We collected ten samples on a small scale transect (1.5-m) and described its microbial diversity through NGS-based ITS and 16S rDNA gene sequencing. A very low number of taxa comprised a considerable proportion of the mat and were shared across all sampling points, whereas the rare biosphere was more phylogenetically diverse (Faith's Phylogenetic Diversity (FPD) index) and phylogenetically disperse (using a null model distribution of Phylogenetic Species Clustering (nmdPSC)) than the abundant (high read count) taxa for both analyzed libraries. We also found a distinctive metabolome profile for each sample and were able to tentatively annotate several classes of compounds with relevant biological properties.
doi_str_mv 10.7717/peerj.13579
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2167-8359
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source ProQuest - Publicly Available Content Database; PubMed Central
subjects Analysis
Biodiversity
Biogeography
Bioinformatics
Biosphere
Classification
Cuatro Ciénegas Coahuila
DNA, Ribosomal
Ecology
Environment
Flat panel displays
Geographical distribution
Metabolites
Metabolome analysis
Mexico
Microbial communities
Microbiology
Phylogenetic diversity
Phylogenetics
Phylogeny
Rare biosphere
rRNA 16S
Salinity
Seasons
Taxonomy
title Diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect
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