Anoikis-Related Long Non-Coding RNA Signatures to Predict Prognosis and Immune Infiltration of Gastric Cancer

• Published in: Bioengineering (Basel) 2024-09, Vol.11 (9), p.893
• Main Authors: Meng, Wen-Jun, Guo, Jia-Min, Huang, Li, Zhang, Yao-Yu, Zhu, Yue-Ting, Tang, Lian-Sha, Wang, Jia-Ling, Li, Hong-Shuai, Liu, Ji-Yan
• Format: Article
• Language: English
• Subjects: Analysis; Anoikis; Apoptosis; bioinformatics; Biomarkers; Cancer; Cancer therapies; Cell death; Chemotherapy; Correlation analysis; Gastric cancer; Gene sequencing; Genes; Genetic aspects; Genomes; Genomic analysis; Genomics; immune infiltration; Immune system; Immunology; Immunotherapy; Infiltration; Information processing; long non-coding RNA; Medical prognosis; Metastases; Metastasis; Microenvironments; Nomograms; Non-coding RNA; Pazopanib; Prediction models; Prognosis; prognostic model; Regression models; Risk assessment; Risk groups; RNA; RNA sequencing; Stomach cancer; Tumors
• ISSN: 2306-5354; 2306-5354
• DOI: 10.3390/bioengineering11090893

Anoikis is a distinct type of programmed cell death and a unique mechanism for tumor progress. However, its exact function in gastric cancer (GC) remains unknown. This study aims to investigate the function of anoikis-related lncRNA (ar-lncRNA) in the prognosis of GC and its immunological infiltration. The ar-lncRNAs were derived from RNA sequencing data and associated clinical information obtained from The Cancer Genome Atlas. Pearson correlation analysis, differential screening, LASSO and Cox regression were utilized to identify the typical ar-lncRNAs with prognostic significance, and the corresponding risk model was constructed, respectively. Comprehensive methods were employed to assess the clinical characteristics of the prediction model, ensuring the accuracy of the prediction results. Further analysis was conducted on the relationship between immune microenvironment and risk features, and sensitivity predictions were made about anticancer medicines. A risk model was built according to seven selected ar-lncRNAs. The model was validated and the calibration plots were highly consistent in validating nomogram predictions. Further analyses revealed the great accuracy of the model and its ability to serve as a stand-alone GC prognostic factor. We subsequently disclosed that high-risk groups display significant enrichment in pathways related to tumors and the immune system. Additionally, in tumor immunoassays, notable variations in immune infiltrates and checkpoints were noted between different risk groups. This study proposes, for the first time, that prognostic signatures of ar-lncRNA can be established in GC. These signatures accurately predict the prognosis of GC and offer potential biomarkers, suggesting new avenues for basic research, prognosis prediction and personalized diagnosis and treatment of GC.