Bioinformatics Data Mining Approach Suggests Coexpression of AGTPBP1 with an ALS-linked Gene C9orf72

• Published in: Journal of Central Nervous System Disease 2015-06, Vol.2015 (7), p.15-26
• Main Authors: Kitano, Shouta, Kino, Yoshihiro, Yamamoto, Yoji, Takitani, Mika, Miyoshi, Junko, Ishida, Tsuyoshi, Saito, Yuko, Arima, Kunimasa, Satoh, Jun-Ichi
• Format: Article
• Language: English
• Subjects: Amyotrophic lateral sclerosis; Bioinformatics; Care and treatment; Complications and side effects; Development and progression; Original Research; Protein binding; Risk factors
• ISSN: 1179-5735; 1179-5735
• DOI: 10.4137/JCNSD.S24317

Background Expanded GGGGCC hexanucleotide repeats located in the noncoding region of the chromosome 9 open reading frame 72 (C9orf72) gene represent the most common genetic abnormality for familial and sporadic amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Formation of nuclear RNA foci, accumulation of repeat-associated non-ATG-translated dipeptide-repeat proteins, and haploinsufficiency of C9orf72 are proposed for pathological mechanisms of C9ALS/FTD. However, at present, the physiological function of C9orf72 remains largely unknown. Methods By searching on a bioinformatics database named COXPRESdb composed of the comprehensive gene coexpression data, we studied potential C9orf72 interactors. Results We identified the ATP/GTP binding protein 1 (AGTPBP1) gene alternatively named NNA1 encoding a cytosolic carboxypeptidase whose mutation is causative of the degeneration of Purkinje cells and motor neurons as the most significant gene coexpressed with C9orf72. We verified coexpression and interaction of AGTPBP1 and C9orf72 in transfected cells by immunoprecipitation and in neurons of the human brain by double-labeling immunohistochemistry. Furthermore, we found a positive correlation between AGTPBP1 and C9orf72 mRNA expression levels in the set of 21 human brains examined. Conclusions These results suggest that AGTPBP1 serves as a C9orf72 interacting partner that plays a role in the regulation of neuronal function in a coordinated manner within the central nervous system.