Genome-wide discovery, and computational and transcriptional characterization of an AIG gene family in the freshwater snail Biomphalaria glabrata, a vector for Schistosoma mansoni

• Published in: BMC genomics 2020-03, Vol.21 (1), p.190-20, Article 190
• Main Authors: Lu, Lijun, Loker, Eric S, Zhang, Si-Ming, Buddenborg, Sarah K, Bu, Lijing
• Format: Article
• Language: English
• Subjects: AIG gene; AIG1 domain; Amino Acid Motifs; Animals; Biomphalaria - genetics; Biomphalaria - parasitology; Biomphalaria glabrata; Cephalopods; Characterization; Coiled-coil; Coils; Computational Biology - methods; Computer applications; Conserved motif; Disease susceptibility; Disease Vectors; Diseases; Domains; Environmental aspects; Evolution, Molecular; G proteins; Gastropoda; Gene expression; Gene Expression Profiling - veterinary; Gene Expression Regulation; Genes; Genetic aspects; Genetic research; Genome-wide association studies; Genomes; Genomics; GIMAP; GTP Phosphohydrolases - chemistry; GTP Phosphohydrolases - genetics; GTPases; Human blood fluke; IAN; Invertebrates; Microorganisms; Mollusks; Multigene Family; Observations; Organs; Parasites; Pathogens; Phylogenetics; Phylogeny; Physiological aspects; Protein Domains; Proteins; Schistosoma mansoni; Schistosomiasis; Snails; Transcription; Transcription (Genetics); Tropical diseases; Whole Genome Sequencing - veterinary
• ISSN: 1471-2164; 1471-2164
• DOI: 10.1186/s12864-020-6534-z

The AIG (avrRpt2-induced gene) family of GTPases, characterized by the presence of a distinctive AIG1 domain, is mysterious in having a peculiar phylogenetic distribution, a predilection for undergoing expansion and loss, and an uncertain functional role, especially in invertebrates. AIGs are frequently represented as GIMAPs (GTPase of the immunity associated protein family), characterized by presence of the AIG1 domain along with coiled-coil domains. Here we provide an overview of the remarkably expanded AIG repertoire of the freshwater gastropod Biomphalaria glabrata, compare it with AIGs in other organisms, and detail patterns of expression in B. glabrata susceptible or resistant to infection with Schistosoma mansoni, responsible for the neglected tropical disease of intestinal schistosomiasis. We define the 7 conserved motifs that comprise the AIG1 domain in B. glabrata and detail its association with at least 7 other domains, indicative of functional versatility of B. glabrata AIGs. AIG genes were usually found in tandem arrays in the B. glabrata genome, suggestive of an origin by segmental gene duplication. We found 91 genes with complete AIG1 domains, including 64 GIMAPs and 27 AIG genes without coiled-coils, more than known for any other organism except Danio (with > 100). We defined expression patterns of AIG genes in 12 different B. glabrata organs and characterized whole-body AIG responses to microbial PAMPs, and of schistosome-resistant or -susceptible strains of B. glabrata to S. mansoni exposure. Biomphalaria glabrata AIG genes clustered with expansions of AIG genes from other heterobranch gastropods yet showed unique lineage-specific subclusters. Other gastropods and bivalves had separate but also diverse expansions of AIG genes, whereas cephalopods seem to lack AIG genes. The AIG genes of B. glabrata exhibit expansion in both numbers and potential functions, differ markedly in expression between strains varying in susceptibility to schistosomes, and are responsive to immune challenge. These features provide strong impetus to further explore the functional role of AIG genes in the defense responses of B. glabrata, including to suppress or support the development of medically relevant S. mansoni parasites.