The complete mitochondrial genome of Cyphocaris challengeri (Amphipoda: Cyphocarididae)

The amphipod Cyphocaris challengeri is a globally distributed, highly abundant species of zooplankton. Here, we report the complete mitochondrial genome of C. challengeri obtained using the Illumina sequencing platform from a specimen collected from Puget Sound, Washington. The mitogenome is a circu...

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Published in:Mitochondrial DNA. Part B. Resources 2023-10, Vol.8 (10), p.1128-1131
Main Authors: Rabinowitz, Chloe N., Brown, Shannon D., McAllister, Sean M., Winans, Amanda K., Keister, Julie E., Galaska, Matthew P.
Format: Article
Language:English
Subjects:
Amphipoda
Bats
Circular DNA
Cyphocaris challengeri
Environmental DNA
Genes
Genomes
Haplotypes
Laboratories
lysianassoidea
Mitochondria
Mitochondrial DNA
mitogenome
Mitogenome Announcement
mtdna
next-generation sequencing
Phylogenetics
Phylogeny
Plankton
Proteins
Transfer RNA
Zooplankton
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container_title Mitochondrial DNA. Part B. Resources
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creator Rabinowitz, Chloe N.
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description The amphipod Cyphocaris challengeri is a globally distributed, highly abundant species of zooplankton. Here, we report the complete mitochondrial genome of C. challengeri obtained using the Illumina sequencing platform from a specimen collected from Puget Sound, Washington. The mitogenome is a circular DNA molecule with a size of 14,338 bp and 26.7% GC content, with 13 protein-encoding genes, 2 rRNAs, and 22 tRNAs annotated. A maximum likelihood phylogenetic analysis including C. challengeri and all other available mitogenomes from Amphipoda places our mitogenome firmly within the Lysianassoidea superfamily, as expected. The newly described mitochondrial genome of C. challengeri fills a gap in valuable reference data for detecting this organism using molecular methods such as environmental DNA.
doi_str_mv 10.1080/23802359.2023.2270206
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source Taylor & Francis Open Access; Publicly Available Content Database; PubMed Central
subjects Amphipoda
Bats
Circular DNA
Cyphocaris challengeri
Environmental DNA
Genes
Genomes
Haplotypes
Laboratories
lysianassoidea
Mitochondria
Mitochondrial DNA
mitogenome
Mitogenome Announcement
mtdna
next-generation sequencing
Phylogenetics
Phylogeny
Plankton
Proteins
Transfer RNA
Zooplankton
title The complete mitochondrial genome of Cyphocaris challengeri (Amphipoda: Cyphocarididae)
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