Targeted sequencing of selected functional genes in patients with wild-type transthyretin amyloidosis

Wild-type transthyretin (ATTRwt) amyloidosis is caused by the misfolding and deposition of the transthyretin protein (TTR) in the absence of mutations in the TTR gene. Studies regarding the variant form of ATTR amyloidosis (ATTRv) suggest that the presence of single-nucleotide polymorphisms (SNP) in...

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Published in:BMC research notes 2023-10, Vol.16 (1), p.1-249, Article 249
Main Authors: Moreno-Gázquez, Inmaculada, Pérez-Palacios, Raquel, Abengochea-Quílez, Lucia, Lahuerta Pueyo, Carmen, Roteta Unceta Barrenechea, Ana, Andrés Gracia, Alejandro, Aibar Arregui, Miguel Angel, Menao Guillén, Sebastián
Format: Article
Language:English
Subjects:
Amyloidosis
ATTRwt amyloidosis
Clinical significance
Development and progression
DNA methylation
Ethylenediaminetetraacetic acid
Extracellular matrix
Gene variants
Genes
Genetic aspects
Genetic diversity
Genetic factors
Genomes
Heparan sulfate
Peptides
Protein folding
Proteins
Research Note
Single nucleotide polymorphisms
Single-nucleotide polymorphism
Software
Targeted sequencing
Transthyretin
Transthyretin amyloidosis
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Summary:Wild-type transthyretin (ATTRwt) amyloidosis is caused by the misfolding and deposition of the transthyretin protein (TTR) in the absence of mutations in the TTR gene. Studies regarding the variant form of ATTR amyloidosis (ATTRv) suggest that the presence of single-nucleotide polymorphisms (SNP) in genes other than the TTR, may influence the development of the disease. However, other genetic factors involved in the aetiopathogenesis of ATTRwt are currently unknown. This work investigates the presence of sequence variants in genes selected for their possible impact on ATTRwt amyloidosis. To do so, targeted sequencing of 84 protein-coding genes was performed in a cohort of 27 patients diagnosed with ATTRwt. After applying quality and frequency filtering criteria, 72 rare or novel genetic variants were found. Subsequent classification according to the ACMG-AMP criteria resulted in 17 variants classified as of uncertain significance in 14 different genes. To our knowledge, this is the first report associating novel gene variants with ATTRwt amyloidosis. In conclusion, this study provides potential insights into the aetiopathogenesis of ATTRwt amyloidosis by linking novel coding-gene variants with the occurrence of the disease.
ISSN:1756-0500
1756-0500
DOI:10.1186/s13104-023-06491-z