Identification of key gene networks controlling organic acid and sugar metabolism during star fruit (Averrhoa carambola) development

• Published in: BMC plant biology 2024-10, Vol.24 (1), p.943-943, Article 943
• Main Authors: Xu, Xinyu, Xu, Lianhuan, Yang, Zirui, Chen, Lei, Wang, Yiqing, Ren, Hui, Zhang, Zehuang, El-Kassaby, Yousry A, Wu, Shasha
• Format: Article
• Language: English
• Subjects: Acids; Analysis; Association analysis; Averrhoa - genetics; Averrhoa - metabolism; Averrhoa carambola; Averrhoa carambola ‘Beiliusuan No. 1’; biochemical pathways; Carbohydrate metabolism; Carbohydrate Metabolism - genetics; Carbohydrates; DNA binding proteins; flavor; Flavors; Food quality; fructose; Fruit; Fruit - genetics; Fruit - growth & development; Fruit - metabolism; Fruits; Gene Expression Profiling; gene expression regulation; Gene Expression Regulation, Plant; Gene Regulatory Networks; Genes; Genes, Plant; Genome; Glucose; Glucose metabolism; Health aspects; Metabolic networks; Metabolism; Metabolites; Metabolome; metabolomics; Molecular mechanics; Molecular modelling; Nutritional aspects; Organic acids; Plant Proteins - genetics; Plant Proteins - metabolism; Signal transduction; Sucrose; Sugar; Sugar and acid metabolism; sugar content; Sugars - metabolism; Transcription factors; Transcriptome; Transcriptomes; unigenes
• ISSN: 1471-2229; 1471-2229
• DOI: 10.1186/s12870-024-05621-4

The sugar and organic acid content significantly impacts the flavor quality of star fruit, and it undergoes dynamic changes during development. However, the metabolic network and molecular mechanisms governing the formation of sugar and organic acid in star fruit remain unclear. In this study, 23 of 743 components were detected by metabonomic analysis. The highest metabolites contents were organic acids and derivatives. The highest sugar content in the fruit was fructose and glucose, followed by sucrose, which proved that A. carambola is a hexose accumulation type fruit. Genome identification preliminarily screened 141 genes related to glucose metabolism and 67 genes related to acid metabolism. A total of 7,881 unigenes were found in transcriptome data, 6,124 differentially expressed genes were screened, with more up-regulated than down-regulated genes. Transcriptome and metabolome association analysis screened seven core candidate genes related to glucose metabolism and 17 core genes highly related to organic acid pathway, and eight differentially expressed sugar and acid genes were selected for qRT-PCR verification. In addition, 29 bHLHs and eight bZIPs transcription factors were predicted in the glucose metabolism pathway, and 23 MYBs, nine C2H2s transcription factors and one GRAS transcription factor was predicted in the acid metabolism pathway, and transcription factors have both positive and negative regulatory effects on sugar and acid structure genes. This study increased our understanding of A. carambola fruit flavor and provided basic information for further exploring the ornamental and edible values of star fruit.