A Bacterial Form I' Rubisco Has a Smaller Carbon Isotope Fractionation than Its Form I Counterpart

• Published in: Biomolecules (Basel, Switzerland) Switzerland), 2023-03, Vol.13 (4), p.596
• Main Authors: Wang, Renée Z, Liu, Albert K, Banda, Douglas M, Fischer, Woodward W, Shih, Patrick M
• Format: Article
• Language: English
• Subjects: Atmosphere; Bacterial Proteins - metabolism; Biochemistry & Molecular Biology; Bioengineering; Biomass; Carbon; Carbon cycle; carbon isotope fractionation; Carbon Isotopes; Cyanobacteria; Enzyme kinetics; evolution; Identification and classification; Isotopes; Metabolism; Photosynthesis; Proteins; Ribulose-bisphosphate carboxylase; Ribulose-Bisphosphate Carboxylase - metabolism; Rubisco
• ISSN: 2218-273X; 2218-273X
• DOI: 10.3390/biom13040596

Form I rubiscos evolved in Cyanobacteria ≥ 2.5 billion years ago and are enzymatically unique due to the presence of small subunits (RbcS) capping both ends of an octameric large subunit (RbcL) rubisco assembly to form a hexadecameric (L S ) holoenzyme. Although RbcS was previously thought to be integral to Form I rubisco stability, the recent discovery of a closely related sister clade of octameric rubiscos (Form I'; L ) demonstrates that the L complex can assemble without small subunits (Banda et al. 2020). Rubisco also displays a kinetic isotope effect (KIE) where the 3PG product is depleted in C relative to C. In Cyanobacteria, only two Form I KIE measurements exist, making interpretation of bacterial carbon isotope data difficult. To aid comparison, we measured in vitro the KIEs of Form I' ( Promineofilum breve) and Form I ( PCC 6301) rubiscos and found the KIE to be smaller in the L rubisco (16.25 ± 1.36‱ vs. 22.42 ± 2.37‱, respectively). Therefore, while small subunits may not be necessary for protein stability, they may affect the KIE. Our findings may provide insight into the function of RbcS and allow more refined interpretation of environmental carbon isotope data.