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Bacterial community structure and bacterial isolates having antimicrobial potential in shrimp pond aquaculture
Diseases outbreaks in pond aquaculture have resulted in huge losses to the aquaculture industry. The emergence of non-antimicrobial and environment friendly agents (probiotics) is the potential consideration for the healthy shrimp aquaculture. The present study was aimed to compare the bacterial com...
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| Published in: | AMB Express 2022-06, Vol.12 (1), p.82-82, Article 82 |
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| creator | Ali, Sardar Xie, Jianmin Zada, Sahib Hu, Zhong Zhang, Yueling Cai, Runlin Wang, Hui |
| description | Diseases outbreaks in pond aquaculture have resulted in huge losses to the aquaculture industry. The emergence of non-antimicrobial and environment friendly agents (probiotics) is the potential consideration for the healthy shrimp aquaculture. The present study was aimed to compare the bacterial community compositions in shrimp ponds and surrounding seawater, as well as isolate probiotic bacteria from the shrimp ponds. Based on the high-throughput of 16S rRNA gene sequencing, all sequences were assigned to 3584 unique operational taxonomic units (OTUs) at 97% similarity levels, which were affiliated with 24 phyla, 54 classes, 235 families, and 367 genera. The 10 most abundant phyla were Bacteroidota, Proteobacteria, Actinobacteriota, Planctomycetota, Cyanobacteria, Chloroflexi, Firmicutes, Desulfobacterota, Patescibacteria and Verrucomicrobiota. Notably, the alpha diversity (Shannon diversity) of shrimp ponds was significantly differences (
P
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| doi_str_mv | 10.1186/s13568-022-01423-9 |
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P
< 0.05) with that of surrounding seawater. There were 2498 and 791 unique OTUs in shrimp ponds and surrounding seawater, respectively. A total of 15 isolates were obtained in the culturable bacterial diversity, and the antibacterial activities were recorded for potential probiotic bacterial isolates against different tested bacterial isolates including pathogenic bacteria. An isolate
Hallobacillus
marinus
HMALI004 showed strong inhibitory effects against three pathogenic bacteria,
Vibrio cholerae
CECT 514, non AHPND
V. parahaemolyticus
BCRC12959 and AHPND
V. parahaemolyticus
PD-2. The isolates
Algophigus
sanaruensis
AGALI005,
Algoriphagus taiwanensis
ATALI009 and
Bacillus
aequororis
BAALI008 were also identified as potential probiotics strains.</description><identifier>ISSN: 2191-0855</identifier><identifier>EISSN: 2191-0855</identifier><identifier>DOI: 10.1186/s13568-022-01423-9</identifier><identifier>PMID: 35737135</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Antibacterial activity ; Aquaculture ; Bacteria ; Bacterial diversity ; Biomedical and Life Sciences ; Biotechnology ; Community structure ; Cyanobacteria ; Gene sequencing ; Genera ; Life Sciences ; Metagenomics ; Microbial Genetics and Genomics ; Microbiology ; Original ; Original Article ; Pathogens ; Ponds ; Probiotics ; rRNA 16S ; Seawater ; Shrimp ponds</subject><ispartof>AMB Express, 2022-06, Vol.12 (1), p.82-82, Article 82</ispartof><rights>The Author(s) 2022</rights><rights>The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c584t-7faa2cc3776d8d8e7f79cd90e09d4ab225723535646f3b2678ab5c63b1a6ee543</citedby><cites>FETCH-LOGICAL-c584t-7faa2cc3776d8d8e7f79cd90e09d4ab225723535646f3b2678ab5c63b1a6ee543</cites><orcidid>0000-0001-7388-8096</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2679958339/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2679958339?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids></links><search><creatorcontrib>Ali, Sardar</creatorcontrib><creatorcontrib>Xie, Jianmin</creatorcontrib><creatorcontrib>Zada, Sahib</creatorcontrib><creatorcontrib>Hu, Zhong</creatorcontrib><creatorcontrib>Zhang, Yueling</creatorcontrib><creatorcontrib>Cai, Runlin</creatorcontrib><creatorcontrib>Wang, Hui</creatorcontrib><title>Bacterial community structure and bacterial isolates having antimicrobial potential in shrimp pond aquaculture</title><title>AMB Express</title><addtitle>AMB Expr</addtitle><description>Diseases outbreaks in pond aquaculture have resulted in huge losses to the aquaculture industry. The emergence of non-antimicrobial and environment friendly agents (probiotics) is the potential consideration for the healthy shrimp aquaculture. The present study was aimed to compare the bacterial community compositions in shrimp ponds and surrounding seawater, as well as isolate probiotic bacteria from the shrimp ponds. Based on the high-throughput of 16S rRNA gene sequencing, all sequences were assigned to 3584 unique operational taxonomic units (OTUs) at 97% similarity levels, which were affiliated with 24 phyla, 54 classes, 235 families, and 367 genera. The 10 most abundant phyla were Bacteroidota, Proteobacteria, Actinobacteriota, Planctomycetota, Cyanobacteria, Chloroflexi, Firmicutes, Desulfobacterota, Patescibacteria and Verrucomicrobiota. Notably, the alpha diversity (Shannon diversity) of shrimp ponds was significantly differences (
P
< 0.05) with that of surrounding seawater. There were 2498 and 791 unique OTUs in shrimp ponds and surrounding seawater, respectively. A total of 15 isolates were obtained in the culturable bacterial diversity, and the antibacterial activities were recorded for potential probiotic bacterial isolates against different tested bacterial isolates including pathogenic bacteria. An isolate
Hallobacillus
marinus
HMALI004 showed strong inhibitory effects against three pathogenic bacteria,
Vibrio cholerae
CECT 514, non AHPND
V. parahaemolyticus
BCRC12959 and AHPND
V. parahaemolyticus
PD-2. The isolates
Algophigus
sanaruensis
AGALI005,
Algoriphagus taiwanensis
ATALI009 and
Bacillus
aequororis
BAALI008 were also identified as potential probiotics strains.</description><subject>Antibacterial activity</subject><subject>Aquaculture</subject><subject>Bacteria</subject><subject>Bacterial diversity</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Community structure</subject><subject>Cyanobacteria</subject><subject>Gene sequencing</subject><subject>Genera</subject><subject>Life Sciences</subject><subject>Metagenomics</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbiology</subject><subject>Original</subject><subject>Original Article</subject><subject>Pathogens</subject><subject>Ponds</subject><subject>Probiotics</subject><subject>rRNA 16S</subject><subject>Seawater</subject><subject>Shrimp ponds</subject><issn>2191-0855</issn><issn>2191-0855</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNp9kstu1TAQhiMEolXpC7CKxIZNwJf4tkGCikulSmxgbY0vOcdHSXxqO5X69nVOqkJZ4I2tmX--GY_-pnmL0QeMJf-YMWVcdoiQDuGe0E69aM4JVrhDkrGXf73PmsucD6gehpDi7HVzRpmgogLOm_kL2OJTgLG1cZqWOZT7Npe02LIk38LsWvOkCDmOUHxu93AX5l3NljAFm6JZs8dYfA2surnN-xSmY41VANwuYJdxBb5pXg0wZn_5eF80v799_XX1o7v5-f366vNNZ5nsSycGAGItFYI76aQXg1DWKeSRcj0YQpgglNUF9HyghnAhwTDLqcHAvWc9vWiuN66LcNDHOgukex0h6FMgpp2GVIIdveaGC-SNc97KnhsCCFtsBQNw1HCJK-vTxjouZvLO1k8mGJ9Bn2fmsNe7eKcVIZz0sgLePwJSvF18LnoK2fpxhNnHJWvCJSJUsFOvd_9ID3FJc11VVQmlmKRUVRXZVHX1OSc_PA2DkV7doTd36OoOfXKHXovoVpSreN759Af9n6oHkEa-cg</recordid><startdate>20220623</startdate><enddate>20220623</enddate><creator>Ali, Sardar</creator><creator>Xie, Jianmin</creator><creator>Zada, Sahib</creator><creator>Hu, Zhong</creator><creator>Zhang, Yueling</creator><creator>Cai, Runlin</creator><creator>Wang, Hui</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><general>SpringerOpen</general><scope>C6C</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>L6V</scope><scope>LK8</scope><scope>M7P</scope><scope>M7S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0001-7388-8096</orcidid></search><sort><creationdate>20220623</creationdate><title>Bacterial community structure and bacterial isolates having antimicrobial potential in shrimp pond aquaculture</title><author>Ali, Sardar ; Xie, Jianmin ; Zada, Sahib ; Hu, Zhong ; Zhang, Yueling ; Cai, Runlin ; Wang, Hui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c584t-7faa2cc3776d8d8e7f79cd90e09d4ab225723535646f3b2678ab5c63b1a6ee543</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Antibacterial activity</topic><topic>Aquaculture</topic><topic>Bacteria</topic><topic>Bacterial diversity</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Community structure</topic><topic>Cyanobacteria</topic><topic>Gene sequencing</topic><topic>Genera</topic><topic>Life Sciences</topic><topic>Metagenomics</topic><topic>Microbial Genetics and Genomics</topic><topic>Microbiology</topic><topic>Original</topic><topic>Original Article</topic><topic>Pathogens</topic><topic>Ponds</topic><topic>Probiotics</topic><topic>rRNA 16S</topic><topic>Seawater</topic><topic>Shrimp ponds</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ali, Sardar</creatorcontrib><creatorcontrib>Xie, Jianmin</creatorcontrib><creatorcontrib>Zada, Sahib</creatorcontrib><creatorcontrib>Hu, Zhong</creatorcontrib><creatorcontrib>Zhang, Yueling</creatorcontrib><creatorcontrib>Cai, Runlin</creatorcontrib><creatorcontrib>Wang, Hui</creatorcontrib><collection>SpringerOpen</collection><collection>CrossRef</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Publicly Available Content (ProQuest)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Engineering Collection</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>AMB Express</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ali, Sardar</au><au>Xie, Jianmin</au><au>Zada, Sahib</au><au>Hu, Zhong</au><au>Zhang, Yueling</au><au>Cai, Runlin</au><au>Wang, Hui</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Bacterial community structure and bacterial isolates having antimicrobial potential in shrimp pond aquaculture</atitle><jtitle>AMB Express</jtitle><stitle>AMB Expr</stitle><date>2022-06-23</date><risdate>2022</risdate><volume>12</volume><issue>1</issue><spage>82</spage><epage>82</epage><pages>82-82</pages><artnum>82</artnum><issn>2191-0855</issn><eissn>2191-0855</eissn><abstract>Diseases outbreaks in pond aquaculture have resulted in huge losses to the aquaculture industry. The emergence of non-antimicrobial and environment friendly agents (probiotics) is the potential consideration for the healthy shrimp aquaculture. The present study was aimed to compare the bacterial community compositions in shrimp ponds and surrounding seawater, as well as isolate probiotic bacteria from the shrimp ponds. Based on the high-throughput of 16S rRNA gene sequencing, all sequences were assigned to 3584 unique operational taxonomic units (OTUs) at 97% similarity levels, which were affiliated with 24 phyla, 54 classes, 235 families, and 367 genera. The 10 most abundant phyla were Bacteroidota, Proteobacteria, Actinobacteriota, Planctomycetota, Cyanobacteria, Chloroflexi, Firmicutes, Desulfobacterota, Patescibacteria and Verrucomicrobiota. Notably, the alpha diversity (Shannon diversity) of shrimp ponds was significantly differences (
P
< 0.05) with that of surrounding seawater. There were 2498 and 791 unique OTUs in shrimp ponds and surrounding seawater, respectively. A total of 15 isolates were obtained in the culturable bacterial diversity, and the antibacterial activities were recorded for potential probiotic bacterial isolates against different tested bacterial isolates including pathogenic bacteria. An isolate
Hallobacillus
marinus
HMALI004 showed strong inhibitory effects against three pathogenic bacteria,
Vibrio cholerae
CECT 514, non AHPND
V. parahaemolyticus
BCRC12959 and AHPND
V. parahaemolyticus
PD-2. The isolates
Algophigus
sanaruensis
AGALI005,
Algoriphagus taiwanensis
ATALI009 and
Bacillus
aequororis
BAALI008 were also identified as potential probiotics strains.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>35737135</pmid><doi>10.1186/s13568-022-01423-9</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0001-7388-8096</orcidid><oa>free_for_read</oa></addata></record> |
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| source | Open Access: PubMed Central; Springer Nature - SpringerLink Journals - Fully Open Access ; Publicly Available Content (ProQuest); Free Full-Text Journals in Chemistry |
| subjects | Antibacterial activity Aquaculture Bacteria Bacterial diversity Biomedical and Life Sciences Biotechnology Community structure Cyanobacteria Gene sequencing Genera Life Sciences Metagenomics Microbial Genetics and Genomics Microbiology Original Original Article Pathogens Ponds Probiotics rRNA 16S Seawater Shrimp ponds |
| title | Bacterial community structure and bacterial isolates having antimicrobial potential in shrimp pond aquaculture |
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