Differences in the Abundance of Auxin Homeostasis Proteins Suggest Their Central Roles for In Vitro Tissue Differentiation in Coffea arabica

is one of the most important crops worldwide. In vitro culture is an alternative for achieving regeneration, propagation, conservation, genetic improvement, and genome editing. The aim of this work was to identify proteins involved in auxin homeostasis by isobaric tandem mass tag (TMT) and the synch...

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Published in:Plants (Basel) 2021-11, Vol.10 (12), p.2607
Main Authors: Quintana-Escobar, Ana O, Méndez-Hernández, Hugo A, Galaz-Ávalos, Rosa M, Elizalde-Contreras, José M, Reyes-Soria, Francisco A, Aguilar-Hernández, Victor, Ruíz-May, Eliel, Loyola-Vargas, Víctor M
Format: Article
Language:English
Subjects:
Acetic acid
ATP-binding protein
Auxins
Biological materials
Butyric acid
Callus
Cell culture
Cell differentiation
Cell division
cellular differentiation
Coffea arabica
Coffee
Conjugation
Differentiation (biology)
Genome editing
Genomes
Homeostasis
Indole-3-butyric acid
Indoleacetic acid
Kinases
Leucine
mass spectrometry analysis
Metabolism
Metabolites
Oxidation
Peptides
plant tissue culture
Propagation
Proteins
Proteomics
quantitative proteomics
Regeneration
Suspension culture
tandem mass tag
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creator Quintana-Escobar, Ana O
Méndez-Hernández, Hugo A
Galaz-Ávalos, Rosa M
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Reyes-Soria, Francisco A
Aguilar-Hernández, Victor
Ruíz-May, Eliel
Loyola-Vargas, Víctor M
description is one of the most important crops worldwide. In vitro culture is an alternative for achieving regeneration, propagation, conservation, genetic improvement, and genome editing. The aim of this work was to identify proteins involved in auxin homeostasis by isobaric tandem mass tag (TMT) and the synchronous precursor selection (SPS)-based MS3 technology on the Orbitrap Fusion™ Tribrid mass spectrometer™ in three types of biological materials corresponding to : plantlet leaves, calli, and suspension cultures. Proteins included in the β-oxidation of indole butyric acid and in the signaling, transport, and conjugation of indole-3-acetic acid were identified, such as the indole butyric response (IBR), the auxin binding protein (ABP), the ATP-binding cassette transporters (ABC), the Gretchen-Hagen 3 proteins (GH3), and the indole-3-acetic-leucine-resistant proteins (ILR). A more significant accumulation of proteins involved in auxin homeostasis was found in the suspension cultures vs. the plantlet, followed by callus vs. plantlet and suspension culture vs. callus, suggesting important roles of these proteins in the cell differentiation process.
doi_str_mv 10.3390/plants10122607
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In vitro culture is an alternative for achieving regeneration, propagation, conservation, genetic improvement, and genome editing. The aim of this work was to identify proteins involved in auxin homeostasis by isobaric tandem mass tag (TMT) and the synchronous precursor selection (SPS)-based MS3 technology on the Orbitrap Fusion™ Tribrid mass spectrometer™ in three types of biological materials corresponding to : plantlet leaves, calli, and suspension cultures. Proteins included in the β-oxidation of indole butyric acid and in the signaling, transport, and conjugation of indole-3-acetic acid were identified, such as the indole butyric response (IBR), the auxin binding protein (ABP), the ATP-binding cassette transporters (ABC), the Gretchen-Hagen 3 proteins (GH3), and the indole-3-acetic-leucine-resistant proteins (ILR). 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subjects Acetic acid
ATP-binding protein
Auxins
Biological materials
Butyric acid
Callus
Cell culture
Cell differentiation
Cell division
cellular differentiation
Coffea arabica
Coffee
Conjugation
Differentiation (biology)
Genome editing
Genomes
Homeostasis
Indole-3-butyric acid
Indoleacetic acid
Kinases
Leucine
mass spectrometry analysis
Metabolism
Metabolites
Oxidation
Peptides
plant tissue culture
Propagation
Proteins
Proteomics
quantitative proteomics
Regeneration
Suspension culture
tandem mass tag
title Differences in the Abundance of Auxin Homeostasis Proteins Suggest Their Central Roles for In Vitro Tissue Differentiation in Coffea arabica
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