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Frequency of Y-chromosome STRs using PowerPlex® Y23 System in Iraqi population
Background Y-chromosome STRs are valuable in the forensic identification of male DNA from sexual assault cases, and they are used to link families through genetic genealogy . Materials and methods For Y-STR analysis, 1032 male blood samples were used in this study, direct PCR technique was used for...
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Published in: | Egyptian journal of forensic sciences 2020-05, Vol.10 (1), p.1-8, Article 12 |
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creator | Mahmood, Hanan K. Salman, Nadia F. Salih, Khalifa M. Hasan, Dhurgham H. Al-Zubaidi, Mohammed M. |
description | Background
Y-chromosome STRs are valuable in the forensic identification of male DNA from sexual assault cases, and they are used to link families through genetic genealogy
.
Materials and methods
For Y-STR analysis, 1032 male blood samples were used in this study, direct PCR technique was used for DNA amplification using the PowerPlex® Y23 System, and then PCR product was run with Genetic Analyzer, and the data were analyzed with the Gene Mapper ID Analysis Software. Frequency-based statistical analysis was calculated with GenAlEx 6.5-Genetic Analysis
.
Results
One hundred and eighty-five alleles were detected at the 23 Y-STR loci in 1032 samples. Alleles frequency ranged from 0.002 to 0.813 and the highest allele frequency registered (0.813) for allele 11 at locus DYS392, and the mean haplotype diversity was 0.616 ± 0.027. New variants were registered for DYS458 locus.
Conclusion
The present study established the genetic information obtained by using the PowerPlex® Y23 System for the Iraqi population and also created a database of 23 Y STR markers in this population. |
doi_str_mv | 10.1186/s41935-020-00186-3 |
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Y-chromosome STRs are valuable in the forensic identification of male DNA from sexual assault cases, and they are used to link families through genetic genealogy
.
Materials and methods
For Y-STR analysis, 1032 male blood samples were used in this study, direct PCR technique was used for DNA amplification using the PowerPlex® Y23 System, and then PCR product was run with Genetic Analyzer, and the data were analyzed with the Gene Mapper ID Analysis Software. Frequency-based statistical analysis was calculated with GenAlEx 6.5-Genetic Analysis
.
Results
One hundred and eighty-five alleles were detected at the 23 Y-STR loci in 1032 samples. Alleles frequency ranged from 0.002 to 0.813 and the highest allele frequency registered (0.813) for allele 11 at locus DYS392, and the mean haplotype diversity was 0.616 ± 0.027. New variants were registered for DYS458 locus.
Conclusion
The present study established the genetic information obtained by using the PowerPlex® Y23 System for the Iraqi population and also created a database of 23 Y STR markers in this population.</description><identifier>ISSN: 2090-5939</identifier><identifier>ISSN: 2090-536X</identifier><identifier>EISSN: 2090-5939</identifier><identifier>DOI: 10.1186/s41935-020-00186-3</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Forensic Medicine ; Haplotype ; Locus ; Medicine ; Medicine & Public Health ; Original Article ; Pathology ; PowerPlex® Y23 System ; Sex crimes ; Y-chromosome STRs</subject><ispartof>Egyptian journal of forensic sciences, 2020-05, Vol.10 (1), p.1-8, Article 12</ispartof><rights>The Author(s) 2020</rights><rights>The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c429t-4c4f623122bf89a673a4e8b9f15fb00f6a01f2c67ddc040451b546cec7538b173</citedby><cites>FETCH-LOGICAL-c429t-4c4f623122bf89a673a4e8b9f15fb00f6a01f2c67ddc040451b546cec7538b173</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.proquest.com/docview/2405359774?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,21376,21394,25753,27924,27925,33611,33769,37012,43733,43814,44590</link.rule.ids></links><search><creatorcontrib>Mahmood, Hanan K.</creatorcontrib><creatorcontrib>Salman, Nadia F.</creatorcontrib><creatorcontrib>Salih, Khalifa M.</creatorcontrib><creatorcontrib>Hasan, Dhurgham H.</creatorcontrib><creatorcontrib>Al-Zubaidi, Mohammed M.</creatorcontrib><title>Frequency of Y-chromosome STRs using PowerPlex® Y23 System in Iraqi population</title><title>Egyptian journal of forensic sciences</title><addtitle>Egypt J Forensic Sci</addtitle><description>Background
Y-chromosome STRs are valuable in the forensic identification of male DNA from sexual assault cases, and they are used to link families through genetic genealogy
.
Materials and methods
For Y-STR analysis, 1032 male blood samples were used in this study, direct PCR technique was used for DNA amplification using the PowerPlex® Y23 System, and then PCR product was run with Genetic Analyzer, and the data were analyzed with the Gene Mapper ID Analysis Software. Frequency-based statistical analysis was calculated with GenAlEx 6.5-Genetic Analysis
.
Results
One hundred and eighty-five alleles were detected at the 23 Y-STR loci in 1032 samples. Alleles frequency ranged from 0.002 to 0.813 and the highest allele frequency registered (0.813) for allele 11 at locus DYS392, and the mean haplotype diversity was 0.616 ± 0.027. New variants were registered for DYS458 locus.
Conclusion
The present study established the genetic information obtained by using the PowerPlex® Y23 System for the Iraqi population and also created a database of 23 Y STR markers in this population.</description><subject>Forensic Medicine</subject><subject>Haplotype</subject><subject>Locus</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Original Article</subject><subject>Pathology</subject><subject>PowerPlex® Y23 System</subject><subject>Sex crimes</subject><subject>Y-chromosome STRs</subject><issn>2090-5939</issn><issn>2090-536X</issn><issn>2090-5939</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>ALSLI</sourceid><sourceid>BGRYB</sourceid><sourceid>M0O</sourceid><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNp9UctOwzAQjBBIVKU_wMkS58D6ESc5oopCpUqtoBx6smzXLqnSuLVTQX-Kj-DLMA0CTuxlV6OZ2dVOklxiuMa44DeB4ZJmKRBIASKQ0pOkR6CENCtpefpnPk8GIawhFo9EhnvJdOTNbm8afUDOokWqX7zbuOA2Bj3NHwPah6pZoZl7NX5Wm7ePd7QgFD0dQms2qGrQ2MtdhbZuu69lW7nmIjmzsg5m8N37yfPobj58SCfT-_HwdpJqRso2ZZpZTigmRNmilDynkplClRZnVgFYLgFbonm-XGpgwDKsMsa10XlGC4Vz2k_Gne_SybXY-moj_UE4WYkj4PxKSN9WujYiB0oN5cCkLljBlMqVIgXRmADHkqvoddV5bb2LvwitWLu9b-L5gjDIaFbmOYss0rG0dyF4Y3-2YhBfOYguBxFzEMccBI0i2olCJDcr43-t_1F9ApnViTo</recordid><startdate>20200520</startdate><enddate>20200520</enddate><creator>Mahmood, Hanan K.</creator><creator>Salman, Nadia F.</creator><creator>Salih, Khalifa M.</creator><creator>Hasan, Dhurgham H.</creator><creator>Al-Zubaidi, Mohammed M.</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><general>SpringerOpen</general><scope>C6C</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>0-V</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>8AM</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ALSLI</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BGRYB</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>K7.</scope><scope>K9.</scope><scope>M0O</scope><scope>M0S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>DOA</scope></search><sort><creationdate>20200520</creationdate><title>Frequency of Y-chromosome STRs using PowerPlex® Y23 System in Iraqi population</title><author>Mahmood, Hanan K. ; Salman, Nadia F. ; Salih, Khalifa M. ; Hasan, Dhurgham H. ; Al-Zubaidi, Mohammed M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c429t-4c4f623122bf89a673a4e8b9f15fb00f6a01f2c67ddc040451b546cec7538b173</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Forensic Medicine</topic><topic>Haplotype</topic><topic>Locus</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Original Article</topic><topic>Pathology</topic><topic>PowerPlex® Y23 System</topic><topic>Sex crimes</topic><topic>Y-chromosome STRs</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mahmood, Hanan K.</creatorcontrib><creatorcontrib>Salman, Nadia F.</creatorcontrib><creatorcontrib>Salih, Khalifa M.</creatorcontrib><creatorcontrib>Hasan, Dhurgham H.</creatorcontrib><creatorcontrib>Al-Zubaidi, Mohammed M.</creatorcontrib><collection>Springer_OA刊</collection><collection>CrossRef</collection><collection>ProQuest Social Sciences Premium Collection【Remote access available】</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Criminal Justice Database (Alumni Edition)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>Social Science Premium Collection</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Criminology Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Criminal Justice (Alumni)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Criminal Justice Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Publicly Available Content Database (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Open Access: DOAJ - Directory of Open Access Journals</collection><jtitle>Egyptian journal of forensic sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mahmood, Hanan K.</au><au>Salman, Nadia F.</au><au>Salih, Khalifa M.</au><au>Hasan, Dhurgham H.</au><au>Al-Zubaidi, Mohammed M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Frequency of Y-chromosome STRs using PowerPlex® Y23 System in Iraqi population</atitle><jtitle>Egyptian journal of forensic sciences</jtitle><stitle>Egypt J Forensic Sci</stitle><date>2020-05-20</date><risdate>2020</risdate><volume>10</volume><issue>1</issue><spage>1</spage><epage>8</epage><pages>1-8</pages><artnum>12</artnum><issn>2090-5939</issn><issn>2090-536X</issn><eissn>2090-5939</eissn><abstract>Background
Y-chromosome STRs are valuable in the forensic identification of male DNA from sexual assault cases, and they are used to link families through genetic genealogy
.
Materials and methods
For Y-STR analysis, 1032 male blood samples were used in this study, direct PCR technique was used for DNA amplification using the PowerPlex® Y23 System, and then PCR product was run with Genetic Analyzer, and the data were analyzed with the Gene Mapper ID Analysis Software. Frequency-based statistical analysis was calculated with GenAlEx 6.5-Genetic Analysis
.
Results
One hundred and eighty-five alleles were detected at the 23 Y-STR loci in 1032 samples. Alleles frequency ranged from 0.002 to 0.813 and the highest allele frequency registered (0.813) for allele 11 at locus DYS392, and the mean haplotype diversity was 0.616 ± 0.027. New variants were registered for DYS458 locus.
Conclusion
The present study established the genetic information obtained by using the PowerPlex® Y23 System for the Iraqi population and also created a database of 23 Y STR markers in this population.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1186/s41935-020-00186-3</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Forensic Medicine Haplotype Locus Medicine Medicine & Public Health Original Article Pathology PowerPlex® Y23 System Sex crimes Y-chromosome STRs |
title | Frequency of Y-chromosome STRs using PowerPlex® Y23 System in Iraqi population |
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