H4K20me3 is important for Ash1-mediated H3K36me3 and transcriptional silencing in facultative heterochromatin in a fungal pathogen

• Published in: PLoS genetics 2023-09, Vol.19 (9), p.e1010945-e1010945
• Main Authors: Möller, Mareike, Ridenour, John B, Wright, Devin F, Martin, Faith A, Freitag, Michael
• Format: Article
• Language: English
• Subjects: Analysis; Animals; Biology and Life Sciences; Cell cycle; Chromatin; Chromosome deletion; Chromosomes; Derepression; DNA methylation; DNA repair; Fungi; Gene deletion; Gene silencing; Genes; Genetic aspects; Genetic engineering; Genetic transcription; Genomes; Genotoxicity; H4 gene; Heterochromatin; Heterochromatin - genetics; Histone H3; Histone H4; Histones; Histones - genetics; Histones - metabolism; Identification and classification; Lysine; Methylation; Methyltransferase; Nucleosomes; Pathogens; Physical Sciences; Proteins; Transcription activation; Transferases; Yeast
• ISSN: 1553-7404; 1553-7390; 1553-7404
• DOI: 10.1371/journal.pgen.1010945

Facultative heterochromatin controls development and differentiation in many eukaryotes. In metazoans, plants, and many filamentous fungi, facultative heterochromatin is characterized by transcriptional repression and enrichment with nucleosomes that are trimethylated at histone H3 lysine 27 (H3K27me3). While loss of H3K27me3 results in derepression of transcriptional gene silencing in many species, additional up- and downstream layers of regulation are necessary to mediate control of transcription in chromosome regions enriched with H3K27me3. Here, we investigated the effects of one histone mark on histone H4, namely H4K20me3, in the fungus Zymoseptoria tritici, a globally important pathogen of wheat. Deletion of kmt5, the gene encoding the sole methyltransferase responsible for H4K20 methylation, resulted in global derepression of transcription, especially in regions of facultative heterochromatin. Derepression in the absence of H4K20me3 not only affected known genes but also a large number of novel, previously undetected transcripts generated from regions of facultative heterochromatin on accessory chromosomes. Transcriptional activation in kmt5 deletion strains was accompanied by a complete loss of Ash1-mediated H3K36me3 and chromatin reorganization affecting H3K27me3 and H3K4me2 distribution in regions of facultative heterochromatin. Strains with H4K20L, M or Q mutations in the single histone H4 gene of Z. tritici recapitulated these chromatin changes, suggesting that H4K20me3 is important for Ash1-mediated H3K36me3. The ∆kmt5 mutants we obtained were more sensitive to genotoxic stressors than wild type and both, ∆kmt5 and ∆ash1, showed greatly increased rates of accessory chromosome loss. Taken together, our results provide insights into an unsuspected mechanism involved in the assembly and maintenance of facultative heterochromatin.