Loading…
Molecular phylogeny and identification of agromyzid leafminers in China, with a focus on the worldwide genus Liriomyza (Diptera: Agromyzidae)
Leaf-mining flies (Diptera: Agromyzidae) are a diverse family of small-bodied insects that feed on living plant tissues as larvae. Various species in this family are considered globally invasive and have caused great agricultural economic losses. In China, economically important vegetable crops have...
Saved in:
Published in: | Journal of Integrative Agriculture 2023-10, Vol.22 (10), p.3115-3134 |
---|---|
Main Authors: | , , , , , , , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites Items that cite this one |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | cdi_FETCH-LOGICAL-c440t-7469efda4637f7a4e2621711e3d7e8a3da27f4d62ee461fa3c72e98c0658f4da3 |
---|---|
cites | cdi_FETCH-LOGICAL-c440t-7469efda4637f7a4e2621711e3d7e8a3da27f4d62ee461fa3c72e98c0658f4da3 |
container_end_page | 3134 |
container_issue | 10 |
container_start_page | 3115 |
container_title | Journal of Integrative Agriculture |
container_volume | 22 |
creator | LIANG, Yong-xuan DU, Su-jie ZHONG, Yu-jun WANG, Qi-jing ZHOU, Qiong WAN, Fang-hao GUO, Jian-yang LIU, Wan-xue |
description | Leaf-mining flies (Diptera: Agromyzidae) are a diverse family of small-bodied insects that feed on living plant tissues as larvae. Various species in this family are considered globally invasive and have caused great agricultural economic losses. In China, economically important vegetable crops have been seriously damaged by these pest insects, especially by species of the genus Liriomyza. However, these species are difficult to differentiate because of their morphological similarities, and the Chinese fauna remains poorly known. To explore the relevant pest species in China and their phylogeny, agromyzid leafminers were collected from 2016 to 2019, and identified based on morphological characteristics and DNA barcodes. In total, 27 species from five genera of Agromyzidae were sampled and identified, including 16 species of Liriomyza. Both mitochondrial and nuclear genes were used to reconstruct their phylogenetic relationships and estimate the divergence time. Highly congruent and well-supported phylogenetic trees were obtained using the Bayesian inference and maximum-likelihood methods. This analysis revealed two main clades in Liriomyza, and clade 2 was inferred to have diverged from clade 1 approximately 27.40 million years ago (95% highest posterior density: 23.03–31.52 million years ago) in the Oligocene. Differences were observed in the distribution patterns and host associations between the Liriomyza clades. Clade 2 species are distributed in cool, high-latitude environments, suggesting that they may have evolved into a cool-adapted lineage. |
doi_str_mv | 10.1016/j.jia.2023.04.030 |
format | article |
fullrecord | <record><control><sourceid>wanfang_jour_doaj_</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_720c696f458b42fba6ebcda42b9eb189</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><wanfj_id>zgnykx_e202310016</wanfj_id><els_id>S2095311923001004</els_id><doaj_id>oai_doaj_org_article_720c696f458b42fba6ebcda42b9eb189</doaj_id><sourcerecordid>zgnykx_e202310016</sourcerecordid><originalsourceid>FETCH-LOGICAL-c440t-7469efda4637f7a4e2621711e3d7e8a3da27f4d62ee461fa3c72e98c0658f4da3</originalsourceid><addsrcrecordid>eNp9kcuO1DAQRSMEEqNhPoCdl4xEgl9xEliNmtdIjdjA2qrY5bRD2m45aZrMP_DPuGlgyapKV3VPleoWxXNGK0aZejVWo4eKUy4qKisq6KPiioual0Ly-nHuaVeXgrHuaXEzzyOllNU1paq9Kn5-ihOa4wSJHHbrFAcMK4FgibcYFu-8gcXHQKIjMKS4Xx-8JROC2_uAaSY-kM3OB3hJTn7ZESAumuNMsmPZITnFNNlTRpHMzfLWJ39mAHnx1h8WTPCa3P3FAt4-K544mGa8-VOvi6_v333ZfCy3nz_cb-62pZGSLmUjVYfOglSicQ1I5IqzhjEUtsEWhAXeOGkVR5SKORCm4di1hqq6zTqI6-L-wrURRn1Ifg9p1RG8_i3ENGhIizcT6oZTozrlZN32krseFPYmr-Z9hz1ru8y6vbBOEByEQY_xmEK-Xj8MYf32Q-M5GJZ_rvIsu8yaFOc5ofu3m1F9jlKPOkepzw5Npc5RZs-biwfzQ757THo2HoNB6xOaJV_s_-P-BcC9qL4</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Molecular phylogeny and identification of agromyzid leafminers in China, with a focus on the worldwide genus Liriomyza (Diptera: Agromyzidae)</title><source>ScienceDirect Journals</source><creator>LIANG, Yong-xuan ; DU, Su-jie ; ZHONG, Yu-jun ; WANG, Qi-jing ; ZHOU, Qiong ; WAN, Fang-hao ; GUO, Jian-yang ; LIU, Wan-xue</creator><creatorcontrib>LIANG, Yong-xuan ; DU, Su-jie ; ZHONG, Yu-jun ; WANG, Qi-jing ; ZHOU, Qiong ; WAN, Fang-hao ; GUO, Jian-yang ; LIU, Wan-xue</creatorcontrib><description>Leaf-mining flies (Diptera: Agromyzidae) are a diverse family of small-bodied insects that feed on living plant tissues as larvae. Various species in this family are considered globally invasive and have caused great agricultural economic losses. In China, economically important vegetable crops have been seriously damaged by these pest insects, especially by species of the genus Liriomyza. However, these species are difficult to differentiate because of their morphological similarities, and the Chinese fauna remains poorly known. To explore the relevant pest species in China and their phylogeny, agromyzid leafminers were collected from 2016 to 2019, and identified based on morphological characteristics and DNA barcodes. In total, 27 species from five genera of Agromyzidae were sampled and identified, including 16 species of Liriomyza. Both mitochondrial and nuclear genes were used to reconstruct their phylogenetic relationships and estimate the divergence time. Highly congruent and well-supported phylogenetic trees were obtained using the Bayesian inference and maximum-likelihood methods. This analysis revealed two main clades in Liriomyza, and clade 2 was inferred to have diverged from clade 1 approximately 27.40 million years ago (95% highest posterior density: 23.03–31.52 million years ago) in the Oligocene. Differences were observed in the distribution patterns and host associations between the Liriomyza clades. Clade 2 species are distributed in cool, high-latitude environments, suggesting that they may have evolved into a cool-adapted lineage.</description><identifier>ISSN: 2095-3119</identifier><identifier>EISSN: 2352-3425</identifier><identifier>DOI: 10.1016/j.jia.2023.04.030</identifier><language>eng</language><publisher>Elsevier B.V</publisher><subject>agromyzid leafminer ; distribution pattern ; divergence time ; identification ; Liriomyza ; phylogenetics</subject><ispartof>Journal of Integrative Agriculture, 2023-10, Vol.22 (10), p.3115-3134</ispartof><rights>2023 CAAS. Publishing services by Elsevier B.V</rights><rights>Copyright © Wanfang Data Co. Ltd. All Rights Reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c440t-7469efda4637f7a4e2621711e3d7e8a3da27f4d62ee461fa3c72e98c0658f4da3</citedby><cites>FETCH-LOGICAL-c440t-7469efda4637f7a4e2621711e3d7e8a3da27f4d62ee461fa3c72e98c0658f4da3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.wanfangdata.com.cn/images/PeriodicalImages/zgnykx-e/zgnykx-e.jpg</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>LIANG, Yong-xuan</creatorcontrib><creatorcontrib>DU, Su-jie</creatorcontrib><creatorcontrib>ZHONG, Yu-jun</creatorcontrib><creatorcontrib>WANG, Qi-jing</creatorcontrib><creatorcontrib>ZHOU, Qiong</creatorcontrib><creatorcontrib>WAN, Fang-hao</creatorcontrib><creatorcontrib>GUO, Jian-yang</creatorcontrib><creatorcontrib>LIU, Wan-xue</creatorcontrib><title>Molecular phylogeny and identification of agromyzid leafminers in China, with a focus on the worldwide genus Liriomyza (Diptera: Agromyzidae)</title><title>Journal of Integrative Agriculture</title><description>Leaf-mining flies (Diptera: Agromyzidae) are a diverse family of small-bodied insects that feed on living plant tissues as larvae. Various species in this family are considered globally invasive and have caused great agricultural economic losses. In China, economically important vegetable crops have been seriously damaged by these pest insects, especially by species of the genus Liriomyza. However, these species are difficult to differentiate because of their morphological similarities, and the Chinese fauna remains poorly known. To explore the relevant pest species in China and their phylogeny, agromyzid leafminers were collected from 2016 to 2019, and identified based on morphological characteristics and DNA barcodes. In total, 27 species from five genera of Agromyzidae were sampled and identified, including 16 species of Liriomyza. Both mitochondrial and nuclear genes were used to reconstruct their phylogenetic relationships and estimate the divergence time. Highly congruent and well-supported phylogenetic trees were obtained using the Bayesian inference and maximum-likelihood methods. This analysis revealed two main clades in Liriomyza, and clade 2 was inferred to have diverged from clade 1 approximately 27.40 million years ago (95% highest posterior density: 23.03–31.52 million years ago) in the Oligocene. Differences were observed in the distribution patterns and host associations between the Liriomyza clades. Clade 2 species are distributed in cool, high-latitude environments, suggesting that they may have evolved into a cool-adapted lineage.</description><subject>agromyzid leafminer</subject><subject>distribution pattern</subject><subject>divergence time</subject><subject>identification</subject><subject>Liriomyza</subject><subject>phylogenetics</subject><issn>2095-3119</issn><issn>2352-3425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNp9kcuO1DAQRSMEEqNhPoCdl4xEgl9xEliNmtdIjdjA2qrY5bRD2m45aZrMP_DPuGlgyapKV3VPleoWxXNGK0aZejVWo4eKUy4qKisq6KPiioual0Ly-nHuaVeXgrHuaXEzzyOllNU1paq9Kn5-ihOa4wSJHHbrFAcMK4FgibcYFu-8gcXHQKIjMKS4Xx-8JROC2_uAaSY-kM3OB3hJTn7ZESAumuNMsmPZITnFNNlTRpHMzfLWJ39mAHnx1h8WTPCa3P3FAt4-K544mGa8-VOvi6_v333ZfCy3nz_cb-62pZGSLmUjVYfOglSicQ1I5IqzhjEUtsEWhAXeOGkVR5SKORCm4di1hqq6zTqI6-L-wrURRn1Ifg9p1RG8_i3ENGhIizcT6oZTozrlZN32krseFPYmr-Z9hz1ru8y6vbBOEByEQY_xmEK-Xj8MYf32Q-M5GJZ_rvIsu8yaFOc5ofu3m1F9jlKPOkepzw5Npc5RZs-biwfzQ757THo2HoNB6xOaJV_s_-P-BcC9qL4</recordid><startdate>20231001</startdate><enddate>20231001</enddate><creator>LIANG, Yong-xuan</creator><creator>DU, Su-jie</creator><creator>ZHONG, Yu-jun</creator><creator>WANG, Qi-jing</creator><creator>ZHOU, Qiong</creator><creator>WAN, Fang-hao</creator><creator>GUO, Jian-yang</creator><creator>LIU, Wan-xue</creator><general>Elsevier B.V</general><general>State Key Laboratory for Biology of Plant Diseases and Insect Pests,Institute of Plant Protection,Chinese Academy of Agricultural Sciences,Beijing 100193,P.R.China</general><general>College of Life Sciences,Hunan Normal University,Changsha 410081,P.R.China%State Key Laboratory for Biology of Plant Diseases and Insect Pests,Institute of Plant Protection,Chinese Academy of Agricultural Sciences,Beijing 100193,P.R.China%College of Life Sciences,Hunan Normal University,Changsha 410081,P.R.China</general><general>Elsevier</general><scope>6I.</scope><scope>AAFTH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>2B.</scope><scope>4A8</scope><scope>92I</scope><scope>93N</scope><scope>PSX</scope><scope>TCJ</scope><scope>DOA</scope></search><sort><creationdate>20231001</creationdate><title>Molecular phylogeny and identification of agromyzid leafminers in China, with a focus on the worldwide genus Liriomyza (Diptera: Agromyzidae)</title><author>LIANG, Yong-xuan ; DU, Su-jie ; ZHONG, Yu-jun ; WANG, Qi-jing ; ZHOU, Qiong ; WAN, Fang-hao ; GUO, Jian-yang ; LIU, Wan-xue</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c440t-7469efda4637f7a4e2621711e3d7e8a3da27f4d62ee461fa3c72e98c0658f4da3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>agromyzid leafminer</topic><topic>distribution pattern</topic><topic>divergence time</topic><topic>identification</topic><topic>Liriomyza</topic><topic>phylogenetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>LIANG, Yong-xuan</creatorcontrib><creatorcontrib>DU, Su-jie</creatorcontrib><creatorcontrib>ZHONG, Yu-jun</creatorcontrib><creatorcontrib>WANG, Qi-jing</creatorcontrib><creatorcontrib>ZHOU, Qiong</creatorcontrib><creatorcontrib>WAN, Fang-hao</creatorcontrib><creatorcontrib>GUO, Jian-yang</creatorcontrib><creatorcontrib>LIU, Wan-xue</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>CrossRef</collection><collection>Wanfang Data Journals - Hong Kong</collection><collection>WANFANG Data Centre</collection><collection>Wanfang Data Journals</collection><collection>万方数据期刊 - 香港版</collection><collection>China Online Journals (COJ)</collection><collection>China Online Journals (COJ)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Journal of Integrative Agriculture</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>LIANG, Yong-xuan</au><au>DU, Su-jie</au><au>ZHONG, Yu-jun</au><au>WANG, Qi-jing</au><au>ZHOU, Qiong</au><au>WAN, Fang-hao</au><au>GUO, Jian-yang</au><au>LIU, Wan-xue</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular phylogeny and identification of agromyzid leafminers in China, with a focus on the worldwide genus Liriomyza (Diptera: Agromyzidae)</atitle><jtitle>Journal of Integrative Agriculture</jtitle><date>2023-10-01</date><risdate>2023</risdate><volume>22</volume><issue>10</issue><spage>3115</spage><epage>3134</epage><pages>3115-3134</pages><issn>2095-3119</issn><eissn>2352-3425</eissn><abstract>Leaf-mining flies (Diptera: Agromyzidae) are a diverse family of small-bodied insects that feed on living plant tissues as larvae. Various species in this family are considered globally invasive and have caused great agricultural economic losses. In China, economically important vegetable crops have been seriously damaged by these pest insects, especially by species of the genus Liriomyza. However, these species are difficult to differentiate because of their morphological similarities, and the Chinese fauna remains poorly known. To explore the relevant pest species in China and their phylogeny, agromyzid leafminers were collected from 2016 to 2019, and identified based on morphological characteristics and DNA barcodes. In total, 27 species from five genera of Agromyzidae were sampled and identified, including 16 species of Liriomyza. Both mitochondrial and nuclear genes were used to reconstruct their phylogenetic relationships and estimate the divergence time. Highly congruent and well-supported phylogenetic trees were obtained using the Bayesian inference and maximum-likelihood methods. This analysis revealed two main clades in Liriomyza, and clade 2 was inferred to have diverged from clade 1 approximately 27.40 million years ago (95% highest posterior density: 23.03–31.52 million years ago) in the Oligocene. Differences were observed in the distribution patterns and host associations between the Liriomyza clades. Clade 2 species are distributed in cool, high-latitude environments, suggesting that they may have evolved into a cool-adapted lineage.</abstract><pub>Elsevier B.V</pub><doi>10.1016/j.jia.2023.04.030</doi><tpages>20</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2095-3119 |
ispartof | Journal of Integrative Agriculture, 2023-10, Vol.22 (10), p.3115-3134 |
issn | 2095-3119 2352-3425 |
language | eng |
recordid | cdi_doaj_primary_oai_doaj_org_article_720c696f458b42fba6ebcda42b9eb189 |
source | ScienceDirect Journals |
subjects | agromyzid leafminer distribution pattern divergence time identification Liriomyza phylogenetics |
title | Molecular phylogeny and identification of agromyzid leafminers in China, with a focus on the worldwide genus Liriomyza (Diptera: Agromyzidae) |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-25T11%3A04%3A38IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-wanfang_jour_doaj_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Molecular%20phylogeny%20and%20identification%20of%20agromyzid%20leafminers%20in%20China,%20with%20a%20focus%20on%20the%20worldwide%20genus%20Liriomyza%20(Diptera:%20Agromyzidae)&rft.jtitle=Journal%20of%20Integrative%20Agriculture&rft.au=LIANG,%20Yong-xuan&rft.date=2023-10-01&rft.volume=22&rft.issue=10&rft.spage=3115&rft.epage=3134&rft.pages=3115-3134&rft.issn=2095-3119&rft.eissn=2352-3425&rft_id=info:doi/10.1016/j.jia.2023.04.030&rft_dat=%3Cwanfang_jour_doaj_%3Ezgnykx_e202310016%3C/wanfang_jour_doaj_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c440t-7469efda4637f7a4e2621711e3d7e8a3da27f4d62ee461fa3c72e98c0658f4da3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_id=info:pmid/&rft_wanfj_id=zgnykx_e202310016&rfr_iscdi=true |