A simple and inexpensive method for practical storage of field-sample proteins for subsequent MALDI-TOF MS analysis

• Published in: Plant methods 2018-10, Vol.14 (1), p.90-90, Article 90
• Main Authors: Reeve, Michael A, Buddie, Alan G
• Format: Article
• Language: English
• Subjects: Acetonitrile; Acids; Alcoholic beverages; Analysis; Biodegradation; Biological effects; Biological materials; Botanical research; Collection; Deactivation; Degradation; Desorption; Ethanol; Fallopia japonica; Filter paper; High temperature; Humidity; Identification; Impatiens glandulifera; Inactivation; Ionization; Ions; Lasers; Leaves; Mass spectrometry; Mass spectroscopy; Methodology; Methods; Microorganisms; Plant proteins; Protein extraction; Protein immobilisation; Proteins; Quarantine; Scientific imaging; Spectra; Storage; Storage stability; Trifluoroacetic acid
• ISSN: 1746-4811; 1746-4811
• DOI: 10.1186/s13007-018-0358-8

Protein-containing samples can readily be characterised and/or identified using matrix-assisted laser-desorption and ionisation time-of-flight mass spectrometry (MALDI-TOF MS). This technique however requires relatively-fresh biological material that contains proteins that have not yet undergone significant degradation. For field-work collection of samples, problems are often encountered due to delays between collection and sample processing, sample storage (possibly at elevated temperature and/or humidity in some climates), quarantine/regulatory restrictions on the transfer of living biological materials across national borders, and the potential to transfer unwanted microorganisms via non-living biological materials. In an attempt to overcome the above difficulties, we have developed a simple and inexpensive method for practical storage of field-sample proteins, for subsequent MALDI-TOF MS analysis, in which biological material is crushed onto filter paper and dried. The dried and protein-impregnated filter paper can then be soaked in an alcoholic solution suitable for the inactivation of microorganisms of concern and again dried for storage. After subsequent dry storage, the proteins may be eluted from the paper using a solution containing acetonitrile, trifluoroacetic acid, water, and MALDI-TOF MS matrix near to saturation. The extracted proteins are then pipetted onto the MALDI-TOF MS sample plate for subsequent analysis. Using this method, spectra of comparable quality to fresh-material controls have been obtained for acid-soluble proteins from and leaf material. Unlike untreated leaf material, high-quality spectra can be obtained with and without alcohol treatment even after storage for one month at up to 40 °C. We have developed a simple and inexpensive method for practical storage of field-sample proteins for subsequent MALDI-TOF MS analysis. Key benefits of this approach are a reduction in sample degradation, and consequent conservation of taxon-discriminatory spectral profiles, whilst minimising the potential for carryover of viable microorganisms.