Genetic Diversity of Black Amaranth (Amaranthus quitensis Kunth) Landraces of Ecuadorian Highlands: Association Genotypes—Color Morphotypes

Black amaranth (Amarantus quitensis Kunth) is an ancestral crop of the Ecuadorian Andean region, where traditionally it is called ataco or sangorache. Nowadays, there is some information about the phenotypic diversity of black amaranth landraces, but there are no data about their genetic diversity....

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Bibliographic Details
Published in:Agriculture (Basel) 2023-01, Vol.13 (1), p.34
Main Authors: Delgado, Hipatia, Martín, Juan Pedro
Format: Article
Language:English
Subjects:
Agricultural production
Amaranth
ataco
Color
Crops
Domestication
Food
Genetic diversity
genetic structure
Genomes
Genotypes
Germplasm
Heterozygosity
Highlands
landraces
Leaves
on-farm conservation
Pigmentation
Provinces
Rural communities
Seeds
Simple sequence repeats
SSR markers
Stems
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Summary:Black amaranth (Amarantus quitensis Kunth) is an ancestral crop of the Ecuadorian Andean region, where traditionally it is called ataco or sangorache. Nowadays, there is some information about the phenotypic diversity of black amaranth landraces, but there are no data about their genetic diversity. In this study, we evaluated the genetic diversity of 139 black amaranth accessions collected twice (1981–1986 and 2014–2015) in three representative Ecuadorian Andean provinces for this crop (Imbabura, Tungurahua, and Cañar) using nine simple sequence repeats (SSR) markers. We detected low genetic diversity levels; only a total of 36 alleles were amplified in 139 accessions, with a mean allelic richness of 4.0 per marker, observed heterozygosity of 0.014, expected heterozygosity of 0.134, and Shannon’s information index of 0.297. In addition, only 17 genotypes were found, with a predominant genotype (83.6%) and up to 12 accession-unique genotypes. Moreover, a certain genetic diversity decrease was observed over the last decades, especially in Tungurahua and Cañar, where today practically only the predominant genotype exists. The ataco germplasm is genetically structured into two well-defined genotype clusters and could constitute two different genetic lineages. Furthermore, a clear association of each genotype group with a different color morphotype defined in a previous agromorphological characterization was observed. The accessions of the majority group of genotypes showed purple pigmentation in stems, leaves, and inflorescences, whereas those of the other genotype group showed less intense pigmentation (pink stems, inflorescences, and green leaves). Molecular information obtained in this study may be useful for the suitable management and conservation of this underutilized genetic plant resource that is of great food and cultural significance for indigenous farming communities of the Ecuadorian highlands.
ISSN:2077-0472
2077-0472
DOI:10.3390/agriculture13010034