Genetic association of HCRTR2, ADH4 and CLOCK genes with cluster headache: a Chinese population-based case-control study

• Published in: Journal of headache and pain 2018-01, Vol.19 (1), p.1-7, Article 1
• Main Authors: Fan, Zhiliang, Hou, Lei, Wan, Dongjun, Ao, Ran, Zhao, Dengfa, Yu, Shengyuan
• Format: Article
• Language: English
• Subjects: ADH4; ADH4 protein; Adult; Alcohol dehydrogenase; Alcohol Dehydrogenase - genetics; Case-Control Studies; China; Circadian rhythm; Circadian rhythms; Clock; Clock gene; CLOCK Proteins - genetics; Cluster headache; Cluster Headache - genetics; Cycle protein; Female; Gene polymorphism; Genes; Genetic Association Studies; Genetic Predisposition to Disease; Genotype; Genotypes; Haplotypes; HCRTR2; Headache; Headaches; Humans; Internal Medicine; Male; Mass spectroscopy; Medicine; Medicine & Public Health; Middle Aged; Neurology; Orexin receptors; Orexin Receptors - genetics; Orexins; Pain Medicine; Polymorphism; Polymorphism, Single Nucleotide; Population studies; Population-based studies; Research Article; Single-nucleotide polymorphism; Young Adult
• ISSN: 1129-2369; 1129-2377
• DOI: 10.1186/s10194-017-0831-1

Background Cluster headache (CH), a rare primary headache disorder, is currently thought to be a genetic susceptibility which play a role in CH susceptibility. A large numbers of genetic association studies have confirmed that the HCRTR2 (Hypocretin Receptor 2) SNP rs2653349, and the ADH4 (Alcohol Dehydrogenase 4) SNP rs1126671 and rs1800759 polymorphisms are linked to CH. In addition, the CLOCK (Circadian Locomotor Output Cycles Kaput) gene is becoming a research hotspot for CH due to encoding a transcription factor that serves as a basic driving force for circadian rhythm in humans. The purpose of this study was to evaluate the association between CH and the HCRTR2, ADH4 and CLOCK genes in a Chinese CH case–control sample. Methods We genotyped polymorphisms of nine single nucleotide polymorphisms (SNPs) in the HCRTR2, ADH4 and CLOCK genes to perform an association study on a Chinese Han CH case-control sample (112 patients and 192 controls),using Sequenom MALDI-TOF mass spectrometry iPLEX platform. The frequencies and distributions of genotypes and haplotypes were statistically compared between the case and control groups to identify associations with CH. The effects of SNPs on CH were further investigated by multiple logistic regression. Results The frequency of the HCRTR2 SNP rs3800539 GA genotype was significantly higher in cases than in controls (48.2% vs.37.0%). The GA genotypes was associated with a higher CH risk (OR = 1.483, 95% CI: 0.564-3.387, p  = 0.038), however, after Bonferroni correction, the association lost statistical significance. Haplotype analysis of the HCRTR2 SNPs showed that among eight haplotypes, only H1-GTGGGG was linked to a reduced CH risk (44.7% vs. 53.1%, OR = 0.689, 95% CI =0.491~0.966, p  = 0.030). No significant association of ADH4 , CLOCK SNPs with CH was statistically detected in the present study. Conclusions Association between HCRTR2, ADH4,CLOCK gene polymorphisms and CH was not significant in the present study, however, haplotype analysis indicated H1-GTGGGG was linked to a reduced CH risk.