Transcriptome Analyses Provide Insights into the Auditory Function in Trachemys scripta elegans

• Published in: Animals (Basel) 2022-09, Vol.12 (18), p.2410
• Main Authors: Lu, Ningning, Chen, Bo, Qing, Jiao, Lei, Jinhong, Wang, Tongliang, Shi, Haitao, Wang, Jichao
• Format: Article
• Language: English
• Subjects: Auditory system; Brain research; Caretta caretta; Chelonia mydas; Ear; Eardrum; Ears & hearing; Females; Frogs; Gene expression; Genes; Genomes; Hearing; hearing sensitivity; Inner ear; Males; Membranes; Muscles; Network analysis; Reptiles & amphibians; Sensitivity; Sex differences; Sexual dimorphism; Signal transduction; Software; Sound; Trachemys scripta elegans; transcriptome; Transcriptomes; Transcriptomics; Tympanic membrane; Ultrasonic imaging; Vertebrates; γ-Aminobutyric acid
• ISSN: 2076-2615; 2076-2615
• DOI: 10.3390/ani12182410

An auditory ability is essential for communication in vertebrates, and considerable attention has been paid to auditory sensitivity in mammals, birds, and frogs. Turtles were thought to be deaf for a long time; however, recent studies have confirmed the presence of an auditory ability in Trachemys scripta elegans as well as sex-related differences in hearing sensitivity. Earlier studies mainly focused on the morphological and physiological functions of the hearing organ in turtles; thus, the gene expression patterns remain unclear. In this study, 36 transcriptomes from six tissues (inner ear, tympanic membrane, brain, eye, lung, and muscle) were sequenced to explore the gene expression patterns of the hearing system in T. scripta elegans. A weighted gene co-expression network analysis revealed that hub genes related to the inner ear and tympanic membrane are involved in development and signal transduction. Moreover, we identified six differently expressed genes (GABRA1, GABRG2, GABBR2, GNAO1, SLC38A1, and SLC12A5) related to the GABAergic synapse pathway as candidate genes to explain the differences in sexually dimorphic hearing sensitivity. Collectively, this study provides a critical foundation for genetic research on auditory functions in turtles.