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Bacterial Phytochromes, Cyanobacteriochromes and Allophycocyanins as a Source of Near-Infrared Fluorescent Probes
Bacterial photoreceptors absorb light energy and transform it into intracellular signals that regulate metabolism. Bacterial phytochrome photoreceptors (BphPs), some cyanobacteriochromes (CBCRs) and allophycocyanins (APCs) possess the near-infrared (NIR) absorbance spectra that make them promising m...
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Published in: | International journal of molecular sciences 2017-08, Vol.18 (8), p.1691 |
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description | Bacterial photoreceptors absorb light energy and transform it into intracellular signals that regulate metabolism. Bacterial phytochrome photoreceptors (BphPs), some cyanobacteriochromes (CBCRs) and allophycocyanins (APCs) possess the near-infrared (NIR) absorbance spectra that make them promising molecular templates to design NIR fluorescent proteins (FPs) and biosensors for studies in mammalian cells and whole animals. Here, we review structures, photochemical properties and molecular functions of several families of bacterial photoreceptors. We next analyze molecular evolution approaches to develop NIR FPs and biosensors. We then discuss phenotypes of current BphP-based NIR FPs and compare them with FPs derived from CBCRs and APCs. Lastly, we overview imaging applications of NIR FPs in live cells and in vivo. Our review provides guidelines for selection of existing NIR FPs, as well as engineering approaches to develop NIR FPs from the novel natural templates such as CBCRs. |
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Bacterial phytochrome photoreceptors (BphPs), some cyanobacteriochromes (CBCRs) and allophycocyanins (APCs) possess the near-infrared (NIR) absorbance spectra that make them promising molecular templates to design NIR fluorescent proteins (FPs) and biosensors for studies in mammalian cells and whole animals. Here, we review structures, photochemical properties and molecular functions of several families of bacterial photoreceptors. We next analyze molecular evolution approaches to develop NIR FPs and biosensors. We then discuss phenotypes of current BphP-based NIR FPs and compare them with FPs derived from CBCRs and APCs. Lastly, we overview imaging applications of NIR FPs in live cells and in vivo. 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Bacterial phytochrome photoreceptors (BphPs), some cyanobacteriochromes (CBCRs) and allophycocyanins (APCs) possess the near-infrared (NIR) absorbance spectra that make them promising molecular templates to design NIR fluorescent proteins (FPs) and biosensors for studies in mammalian cells and whole animals. Here, we review structures, photochemical properties and molecular functions of several families of bacterial photoreceptors. We next analyze molecular evolution approaches to develop NIR FPs and biosensors. We then discuss phenotypes of current BphP-based NIR FPs and compare them with FPs derived from CBCRs and APCs. Lastly, we overview imaging applications of NIR FPs in live cells and in vivo. Our review provides guidelines for selection of existing NIR FPs, as well as engineering approaches to develop NIR FPs from the novel natural templates such as CBCRs.</description><subject>allophycocyanin</subject><subject>Bacteria</subject><subject>Bacteria - chemistry</subject><subject>Bacteria - genetics</subject><subject>Bacteria - metabolism</subject><subject>bacterial photoreceptor</subject><subject>Bacterial Proteins - chemistry</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - metabolism</subject><subject>Biosensing Techniques - methods</subject><subject>Biosensors</subject><subject>cyanobacteriochrome</subject><subject>Fluorescence</subject><subject>Fluorescent Dyes - chemistry</subject><subject>Fluorescent Dyes - metabolism</subject><subject>Fluorescent indicators</subject><subject>I.R. radiation</subject><subject>Infrared Rays</subject><subject>Infrared spectra</subject><subject>Mammalian cells</subject><subject>Metabolism</subject><subject>Molecular evolution</subject><subject>Near infrared radiation</subject><subject>near-infrared fluorescent protein</subject><subject>Photoreceptors</subject><subject>Phycocyanin - chemistry</subject><subject>Phycocyanin - genetics</subject><subject>Phycocyanin - metabolism</subject><subject>phytochrome</subject><subject>Phytochrome - chemistry</subject><subject>Phytochrome - genetics</subject><subject>Phytochrome - metabolism</subject><subject>Phytochromes</subject><subject>Proteins</subject><subject>Review</subject><subject>tetrapyrrole</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNpdkt1rFDEUxQex2Fp981kGfPGhU_M5SV6EdrG6ULRg-xxuvrqzzEy2yYyw_71Zty1bIXDDuT8OuSe3qj5gdE6pQl-69ZCxRBK3Cr-qTjAjpEGoFa8P7sfV25zXCBFKuHpTHRMpBMaSnVQPl2Annzro65vVdop2leLg81m92MIYzb75pNYwuvqi7-NmtbXRFqIbi1hO_TvOyfo6hvqnh9Qsx5AgeVdf9XNMPls_TvVNisbnd9VRgD7794_1tLq7-na7-NFc__q-XFxcN5YzNjW2FcwYFmxwAqmWG9FaQXAbPEEcApfCWMMNKEcARKDUt44x4FaSlmFw9LRa7n1dhLXepG6AtNUROv1PiOleQ5o623stGVMSkRCQoMwSI2kIKjhHVKmGtcXr695rM5vBu900CfoXpi87Y7fS9_GP5lzsvqYYfH40SPFh9nnSQ1dC6XsYfZyzxopwqRhWqqCf_kPXJduxRFUoqgrE2Y4621M2xZyTD8-PwUjv9kIf7kXBPx4O8Aw_LQL9CwActmU</recordid><startdate>20170803</startdate><enddate>20170803</enddate><creator>Oliinyk, Olena S</creator><creator>Chernov, Konstantin G</creator><creator>Verkhusha, Vladislav V</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20170803</creationdate><title>Bacterial Phytochromes, Cyanobacteriochromes and Allophycocyanins as a Source of Near-Infrared Fluorescent Probes</title><author>Oliinyk, Olena S ; Chernov, Konstantin G ; Verkhusha, Vladislav V</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c544t-c674bb4fcfd70965b76c7216fe205af587bcb5ba9d2aa7f33e6d44a5c82641ad3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>allophycocyanin</topic><topic>Bacteria</topic><topic>Bacteria - chemistry</topic><topic>Bacteria - genetics</topic><topic>Bacteria - metabolism</topic><topic>bacterial photoreceptor</topic><topic>Bacterial Proteins - chemistry</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Proteins - metabolism</topic><topic>Biosensing Techniques - methods</topic><topic>Biosensors</topic><topic>cyanobacteriochrome</topic><topic>Fluorescence</topic><topic>Fluorescent Dyes - chemistry</topic><topic>Fluorescent Dyes - metabolism</topic><topic>Fluorescent indicators</topic><topic>I.R. radiation</topic><topic>Infrared Rays</topic><topic>Infrared spectra</topic><topic>Mammalian cells</topic><topic>Metabolism</topic><topic>Molecular evolution</topic><topic>Near infrared radiation</topic><topic>near-infrared fluorescent protein</topic><topic>Photoreceptors</topic><topic>Phycocyanin - chemistry</topic><topic>Phycocyanin - genetics</topic><topic>Phycocyanin - metabolism</topic><topic>phytochrome</topic><topic>Phytochrome - chemistry</topic><topic>Phytochrome - genetics</topic><topic>Phytochrome - metabolism</topic><topic>Phytochromes</topic><topic>Proteins</topic><topic>Review</topic><topic>tetrapyrrole</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Oliinyk, Olena S</creatorcontrib><creatorcontrib>Chernov, Konstantin G</creatorcontrib><creatorcontrib>Verkhusha, Vladislav V</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection (Proquest)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>ProQuest research library</collection><collection>Research Library (Corporate)</collection><collection>ProQuest Publicly Available Content database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Directory of Open Access Journals</collection><jtitle>International journal of molecular sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Oliinyk, Olena S</au><au>Chernov, Konstantin G</au><au>Verkhusha, Vladislav V</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Bacterial Phytochromes, Cyanobacteriochromes and Allophycocyanins as a Source of Near-Infrared Fluorescent Probes</atitle><jtitle>International journal of molecular sciences</jtitle><addtitle>Int J Mol Sci</addtitle><date>2017-08-03</date><risdate>2017</risdate><volume>18</volume><issue>8</issue><spage>1691</spage><pages>1691-</pages><issn>1422-0067</issn><issn>1661-6596</issn><eissn>1422-0067</eissn><abstract>Bacterial photoreceptors absorb light energy and transform it into intracellular signals that regulate metabolism. Bacterial phytochrome photoreceptors (BphPs), some cyanobacteriochromes (CBCRs) and allophycocyanins (APCs) possess the near-infrared (NIR) absorbance spectra that make them promising molecular templates to design NIR fluorescent proteins (FPs) and biosensors for studies in mammalian cells and whole animals. Here, we review structures, photochemical properties and molecular functions of several families of bacterial photoreceptors. We next analyze molecular evolution approaches to develop NIR FPs and biosensors. We then discuss phenotypes of current BphP-based NIR FPs and compare them with FPs derived from CBCRs and APCs. Lastly, we overview imaging applications of NIR FPs in live cells and in vivo. Our review provides guidelines for selection of existing NIR FPs, as well as engineering approaches to develop NIR FPs from the novel natural templates such as CBCRs.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>28771184</pmid><doi>10.3390/ijms18081691</doi><oa>free_for_read</oa></addata></record> |
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subjects | allophycocyanin Bacteria Bacteria - chemistry Bacteria - genetics Bacteria - metabolism bacterial photoreceptor Bacterial Proteins - chemistry Bacterial Proteins - genetics Bacterial Proteins - metabolism Biosensing Techniques - methods Biosensors cyanobacteriochrome Fluorescence Fluorescent Dyes - chemistry Fluorescent Dyes - metabolism Fluorescent indicators I.R. radiation Infrared Rays Infrared spectra Mammalian cells Metabolism Molecular evolution Near infrared radiation near-infrared fluorescent protein Photoreceptors Phycocyanin - chemistry Phycocyanin - genetics Phycocyanin - metabolism phytochrome Phytochrome - chemistry Phytochrome - genetics Phytochrome - metabolism Phytochromes Proteins Review tetrapyrrole |
title | Bacterial Phytochromes, Cyanobacteriochromes and Allophycocyanins as a Source of Near-Infrared Fluorescent Probes |
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