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Integrative Transcriptomic Analysis Reveals Upregulated Apoptotic Signaling in Wound-Healing Pathway in Rat Liver Fibrosis Models

Liver fibrosis, defined by the aberrant accumulation of extracellular matrix proteins in liver tissue due to chronic inflammation, represents a pressing global health issue. In this study, we investigated the transcriptomic signatures of three independent liver fibrosis models induced by bile duct l...

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Published in:Antioxidants 2023-08, Vol.12 (8), p.1588
Main Authors: Kim, Jihyun, Lee, Changyong, Noh, Sang Gyun, Kim, Seungwoo, Chung, Hae Young, Lee, Haeseung, Moon, Jeon-Ok
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container_title Antioxidants
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Lee, Changyong
Noh, Sang Gyun
Kim, Seungwoo
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Lee, Haeseung
Moon, Jeon-Ok
description Liver fibrosis, defined by the aberrant accumulation of extracellular matrix proteins in liver tissue due to chronic inflammation, represents a pressing global health issue. In this study, we investigated the transcriptomic signatures of three independent liver fibrosis models induced by bile duct ligation, carbon tetrachloride, and dimethylnitrosamine (DMN) to unravel the pathological mechanisms underlying hepatic fibrosis. We observed significant changes in gene expression linked to key characteristics of liver fibrosis, with a distinctive correlation to the burn-wound-healing pathway. Building on these transcriptomic insights, we further probed the p53 signaling pathways within the DMN-induced rat liver fibrosis model, utilizing western blot analysis. We observed a pronounced elevation in p53 protein levels and heightened ratios of BAX/BCL2, cleaved/pro-CASPASE-3, and cleaved/full length-PARP in the livers of DMN-exposed rats. Furthermore, we discovered that orally administering oligonol-a polyphenol, derived from lychee, with anti-oxidative properties-effectively countered the overexpressions of pivotal apoptotic genes within these fibrotic models. In conclusion, our findings offer an in-depth understanding of the molecular alterations contributing to liver fibrosis, spotlighting the essential role of the apoptosis pathway tied to the burn-wound-healing process. Most importantly, our research proposes that regulating this pathway, specifically the balance of apoptosis, could serve as a potential therapeutic approach for treating liver fibrosis.
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In conclusion, our findings offer an in-depth understanding of the molecular alterations contributing to liver fibrosis, spotlighting the essential role of the apoptosis pathway tied to the burn-wound-healing process. Most importantly, our research proposes that regulating this pathway, specifically the balance of apoptosis, could serve as a potential therapeutic approach for treating liver fibrosis.</description><identifier>ISSN: 2076-3921</identifier><identifier>EISSN: 2076-3921</identifier><identifier>DOI: 10.3390/antiox12081588</identifier><identifier>PMID: 37627582</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Animal models ; Antibodies ; Apoptosis ; Archives &amp; records ; BAX protein ; Bcl-2 protein ; Bile ducts ; burn-wound healing ; Carbon tetrachloride ; Caspase-3 ; Extracellular matrix ; Fibrosis ; Gene expression ; Genes ; Genetic aspects ; Health aspects ; hepatoprotective ; Inflammation ; Liver ; Liver cancer ; Liver diseases ; liver fibrosis ; N-Nitrosodimethylamine ; oligonol ; Oxidative stress ; p53 Protein ; Public health ; Signal transduction ; Software ; transcriptomic analysis ; Transcriptomics ; Tumor proteins ; Wound healing</subject><ispartof>Antioxidants, 2023-08, Vol.12 (8), p.1588</ispartof><rights>COPYRIGHT 2023 MDPI AG</rights><rights>2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). 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In this study, we investigated the transcriptomic signatures of three independent liver fibrosis models induced by bile duct ligation, carbon tetrachloride, and dimethylnitrosamine (DMN) to unravel the pathological mechanisms underlying hepatic fibrosis. We observed significant changes in gene expression linked to key characteristics of liver fibrosis, with a distinctive correlation to the burn-wound-healing pathway. Building on these transcriptomic insights, we further probed the p53 signaling pathways within the DMN-induced rat liver fibrosis model, utilizing western blot analysis. We observed a pronounced elevation in p53 protein levels and heightened ratios of BAX/BCL2, cleaved/pro-CASPASE-3, and cleaved/full length-PARP in the livers of DMN-exposed rats. Furthermore, we discovered that orally administering oligonol-a polyphenol, derived from lychee, with anti-oxidative properties-effectively countered the overexpressions of pivotal apoptotic genes within these fibrotic models. 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In conclusion, our findings offer an in-depth understanding of the molecular alterations contributing to liver fibrosis, spotlighting the essential role of the apoptosis pathway tied to the burn-wound-healing process. Most importantly, our research proposes that regulating this pathway, specifically the balance of apoptosis, could serve as a potential therapeutic approach for treating liver fibrosis.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>37627582</pmid><doi>10.3390/antiox12081588</doi><orcidid>https://orcid.org/0000-0002-3215-8828</orcidid><orcidid>https://orcid.org/0000-0002-9947-4032</orcidid><orcidid>https://orcid.org/0000-0002-2466-1925</orcidid><oa>free_for_read</oa></addata></record>
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subjects Animal models
Antibodies
Apoptosis
Archives & records
BAX protein
Bcl-2 protein
Bile ducts
burn-wound healing
Carbon tetrachloride
Caspase-3
Extracellular matrix
Fibrosis
Gene expression
Genes
Genetic aspects
Health aspects
hepatoprotective
Inflammation
Liver
Liver cancer
Liver diseases
liver fibrosis
N-Nitrosodimethylamine
oligonol
Oxidative stress
p53 Protein
Public health
Signal transduction
Software
transcriptomic analysis
Transcriptomics
Tumor proteins
Wound healing
title Integrative Transcriptomic Analysis Reveals Upregulated Apoptotic Signaling in Wound-Healing Pathway in Rat Liver Fibrosis Models
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