Pyrosequencing identification of Mycobacterium tuberculosis W-Beijing

The worldwide expanding Mycobacterium tuberculosis W-Beijing family is associated with treatment failure and relapse. Its identification currently relies on spoligotyping and conventional sequencing. We developed pyrosequencing as an alternative method for its identification. Pyrosequencing found a...

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Bibliographic Details
Published in:BMC research notes 2009-12, Vol.2 (1), p.239-239
Main Authors: Djelouadji, Zoheira, Henry, Mireille, Bachtarzi, Amine, Foselle, Nadège, Raoult, Didier, Drancourt, Michel
Format: Article
Language:English
Subjects:
Antibiotics
Bacilli
Bacteria
Data processing
DNA sequencing
Drug resistance
ethambutol
Experiments
Gene deletion
Identification and classification
Isoniazid
Methods
Mutation
Mycobacterium tuberculosis
Nucleotide sequencing
pyrazinamide
Rifampin
Spacer
spoligotyping
Sputum
Statistical analysis
Streptomycin
Technical Note
Tuberculosis
Typing
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Summary:The worldwide expanding Mycobacterium tuberculosis W-Beijing family is associated with treatment failure and relapse. Its identification currently relies on spoligotyping and conventional sequencing. We developed pyrosequencing as an alternative method for its identification. Pyrosequencing found a G/A substitution in the Rv0927c-pstS3 intergenic spacer and a RD105 deletion, identifying 8/104 M. tuberculosis isolates as W-Beijing isolates. In addition, pyrosequencing found a previously unreported TGC deletion in the Rv0927c gene of W-Beijing isolates. Total concordance was found between the pyrosequencing data and conventional sequencing, as well as reference molecular identification. Multispacer Sequence Typing assigned the W-Beijing isolates to the Asian lineage and the 96 non-W-Beijing isolates to the Euro-American lineage (P < 10-5). The W-Beijing isolates were all susceptible to streptomycin, rifampin, isoniazid, ethambutol, and pyrazinamide; no resistance-associated mutations were detected in these eight W-Beijing isolates. There were no statistically significant differences in the antibiotic susceptibility of W-Beijing and non-W-Beijing isolates (p = 0.2, X2 test). Pyrosequencing correctly identified M. tuberculosis organisms in 26/26 sputum specimens exhibiting acid-fast bacilli. Pyrosequencing results were obtained within four hours, incurring an estimated cost of 1.86 euro/test. Pyrosequencing of the Rv0927c gene and adjacent intergenic spacer is an efficient, low-cost technique for the rapid identification of W-Beijing isolates.
ISSN:1756-0500
1756-0500
DOI:10.1186/1756-0500-2-239