ECEL1 novel mutation in arthrogryposis type 5D: A molecular dynamic simulation study

• Published in: Molecular genetics & genomic medicine 2023-06, Vol.11 (6), p.e2153-n/a
• Main Authors: Ahangari, Najmeh, Gholampour‐Faroji, Nazanin, Doosti, Mohammad, Ghayour Mobarhan, Majid, Shahrokhzadeh, Sima, Karimiani, Ehsan Ghayoor, Hasani‐sabzevar, Bahareh, Torbati, Paria Najarzadeh, Haddad‐Mashadrizeh, Aliakbar
• Format: Article
• Language: English
• Subjects: Amino acids; Arthrogryposis; bioinformatics; Congenital diseases; ECEL1; ECEL1 gene; Enzymes; Ethics; Families & family life; Fetuses; Genetic counseling; genetics; Molecular dynamics; molecular dynamics simulation; Mutants; Mutation; Neurodegenerative diseases; Original; Parents & parenting; Prenatal diagnosis; Proteins; Simulation
• ISSN: 2324-9269; 2324-9269
• DOI: 10.1002/mgg3.2153

Background ECEL1 has been presented as a causal gene of an autosomal recessive form distal arthrogryposis (DA) which affects the distal joints. The present study focused on bioinformatic analysis of a novel mutation in ECEL1, c.535A>G (p. Lys179Glu), which was reported in a family with 2 affected boys and fetus through prenatal diagnosis. Methods Whole‐exome sequencing data analyzed followed by molecular dynamic (MD) simulation of native ECEL1 protein and mutant structures using GROMACS software. One variant c.535A>G, p. Lys179Glu (homozygous) on gene ECEL1 has been detected in proband which was validated in all family members through Sanger sequencing. Results We demonstrated remarkable constructional differences by MD simulation between wild‐type and novel mutant of ECEL1 gene. The reason for the lack of the Zn ion binding in mutation in the ECEL1 protein has been identified by average atomic distance and SMD analysis among the wild‐type and mutant. Conclusion Overall, in this study, we present knowledge of the effect of the studied variant on the ECEL1 protein leading to neurodegenerative disorder in humans. This work may hopefully be supplementary to classical molecular dynamics to dissolve the mutational effects of cofactor‐dependent protein. We have reported a novel mutation c.535A>G (p. Lys179Glu) in the ECEL1 gene in a family with 2 affected boys and a fetus through prenatal diagnosis with arthrogryposis type D. We demonstrated remarkable constructional differences by MD simulation between wild‐type and novel mutant of ECEL1 gene.