Transcriptome-wide identification of WRKY transcription factors and their expression profiles under different stress in Cynanchum thesioides

• Published in: PeerJ (San Francisco, CA) CA), 2022-12, Vol.10, p.e14436-e14436, Article e14436
• Main Authors: Chang, Xiaoyao, Yang, Zhongren, Zhang, Xiaoyan, Zhang, Fenglan, Huang, Xiumei, Han, Xu
• Format: Article
• Language: English
• Subjects: Abiotic stress; Abiotic stresss; Abscisic acid; Agricultural Science; Analysis; Arabidopsis thaliana; Bioinformatics; Biotechnology; Conserved sequence; Cynanchum; Cynanchum - genetics; Cynanchum thesioides; DNA binding proteins; Flowers & plants; Gene expression; Maximum likelihood method; Medicinal plants; Medicine, Botanic; Medicine, Herbal; Phylogenetics; Phylogeny; Plant growth; Plant Growth Regulators - pharmacology; Plant hormones; Plant Proteins - genetics; Plant Science; Protein interaction; RNA sequencing; Seedlings; Transcription factors; Transcription Factors - genetics; Transcriptome - genetics; Transcriptomes; WRKY gene family
• ISSN: 2167-8359; 2167-8359
• DOI: 10.7717/peerj.14436

is an important economic and medicinal plant widely distributed in northern China. WRKY transcription factors (TFs) play important roles in plant growth, development and regulating responses. However, there is no report on the genes in . A total of 19 WRKY transcriptome sequences with complete ORFs were identified as WRKY transcriptome sequences by searching for WRKYs in RNA sequencing data. Then, the genes were classified by phylogenetic and conserved motif analysis of the WRKY family in and . qRT-PCR was used to determine the expression patterns of 19 genes in different tissues and seedlings of under plant hormone (ABA and ETH) and abiotic stresses (cold and salt). The results showed that 19 genes could be divided into groups I-III according to their structure and phylogenetic characteristics, and group II could be divided into five subgroups. The prediction of gene protein interactions indicates that is involved in many biological processes. In addition, the gene was differentially expressed in different tissues and positively responded to abiotic stress and phytohormone treatment, among which , and were significantly induced under various stresses. This study is the first to identify the gene family in , and the systematic analysis lays a foundation for further identification of the function of genes in .