Genome-wide identification and transcript profiles of walnut heat stress transcription factor involved in abiotic stress

• Published in: BMC genomics 2020-07, Vol.21 (1), p.474-474, Article 474
• Main Authors: Liu, Xuejiao, Meng, Panpan, Yang, Guiyan, Zhang, Mengyan, Peng, Shaobing, Zhai, Mei Zhi
• Format: Article
• Language: English
• Subjects: Abiotic stress; Amino acids; Bioinformatics; Chromosomes; Conserved sequence; Cycle protein; Dehydration - genetics; Drought; Droughts; Environmental aspects; Expression profiles; Gene expression; Gene Expression Regulation, Plant - genetics; Gene sequencing; Genes; Genetic aspects; Genomes; Genomics; Heat resistance; Heat shock proteins; Heat Shock Transcription Factors - classification; Heat Shock Transcription Factors - genetics; Heat stress; Heat stress transcription factors (HSFs); Heat tolerance; Heat-Shock Response - genetics; High temperature; Juglans - genetics; Juglans regia; Motif distribution; Multiple alignments; Nucleotide sequence; Phylogenetic analysis; Phylogenetics; Phylogeny; Physiological aspects; Plant heat tolerance; Plant resistance; Plant stress; Proteins; Rain; Salt Stress - genetics; Sequence Alignment; Sequence analysis; Sodium chloride; Stress (Physiology); Stress, Physiological - genetics; Transcription activation; Transcription factors; Walnuts
• ISSN: 1471-2164; 1471-2164
• DOI: 10.1186/s12864-020-06879-2

Walnut (Juglans regia) is an important tree cultivated worldwide and is exposed to a series of both abiotic and biotic stress during their life-cycles. The heat stress transcription factors (HSFs) play a crucial role in plant response to various stresses by regulating the expression of stress-responsive genes. HSF genes are classified into 3 classes: HSFA, HSFB, and HSFC. HSFA gene has transcriptional activation function and is the main regulator of high temperature-induced gene expression. HSFB gene negatively regulates plant resistance to drought and NaCl. And HSFC gene may be involved in plant response to various stresses. There are some reports about the HSF family in herbaceous plants, however, there are no reports about the HSFs in walnut. In this study, based on the complete genome sequencing of walnut, the bioinformatics method was used and 29 HSF genes were identified. These HSFs covered 18 HSFA, 9 HSFB, and 2 HSFC genes. Phylogenetic analysis of these HSF proteins along with those from Arabidopsis thaliana showed that the HSFs in the two species are closely related to each other and have different evolutionary processes. The distribution of conserved motifs and the sequence analysis of HSF genes family indicated that the members of the walnut HSFs are highly conserved. Quantitative Real-Time PCR (qRT-PCR) analysis revealed that the most of walnut HSFs were expressed in the walnut varieties of 'Qingxiang' and 'Xiangling' under high temperature (HT), high salt and drought stress, and some JrHSFs expression pattern are different between the two varieties. The complex HSF genes family from walnut was confirmed by genome-wide identification, evolutionary exploration, sequence characterization and expression analysis. This research provides useful information for future studies on the function of the HSF genes and molecular mechanism in plant stress response.