Development of Ethyl Methanesulfonate Mutant Edamame Soybean (Glycine max (L.) Merr.) Populations and Forward and Reverse Genetic Screening for Early-Flowering Mutants

• Published in: Plants (Basel) 2022-07, Vol.11 (14), p.1839
• Main Authors: Koshika, Natsume, Shioya, Naohiro, Fujimura, Takashi, Oguchi, Rina, Ota, Chie, Kato, Emi, Takahashi, Reiko, Kimura, Shuichi, Furuno, Shinsuke, Saito, Koichi, Okabe, Kazuhiro, Watanabe, Masanori, Hoshino, Tomoki
• Format: Article
• Language: English
• Subjects: Biomarkers; Chromosomes; Cross-breeding; Deletion mutant; Deoxyribonucleic acid; DNA; early-flowering mutant; Eating quality; edamame; Ethyl methanesulfonate; Flowering; Gene deletion; Gene mapping; Genes; Genetic screening; Genetics; Genomes; Glycine max; Homology; Mutagenesis; Mutation; Nonsense mutant; Nucleotides; Population; Population genetics; Population studies; Populations; Quantitative trait loci; Seeds; soybean; Soybeans; Substitutes
• ISSN: 2223-7747; 2223-7747
• DOI: 10.3390/plants11141839

Induced mutation is a viable breeding strategy that is widely utilized in the development of elite plant varieties. We aimed to improve a variety of edamame by constructing novel mutant populations using the ethyl methanesulfonate in soybeans (Glycine max (L.) Merr.). In the M2 population, the flowering stage showed a considerable standard deviation compared to the wild type, confirming that the mutant populations had the expected DNA mutations. To identify the DNA mutations in the mutant populations, we used the targeting induced local lesions in genomes (TILLING) method, which is a reverse genetic method, to search for soybean flowering-related gene mutants. A total of 30 mutants from E1, E3, E4, and PhyA1 genes, which are known to be highly effective genes, or their homologous gene for flowering and maturation found in soybean quantitative trait locus analyses were isolated from our TILLING screening. Among these mutants, there were eleven nonsynonymous substitution mutants, one nonsense mutant, and two single nucleotide deletion mutants that could be expected to reduce or eliminate gene function. The e1, e3, and e4 mutants obtained in this study flowered considerably earlier than the wild type. In particular, the e1 mutant with a nonsynonymous substitution flowered approximately 1 month after sowing regardless of the sowing date, and its harvest date was approximately 1 month earlier than that of the wild type. Mutations identified using the TILLING method could not only be used as gel-based DNA markers with the same manipulation method, but the mutations could also be detected as DNA markers by the high-resolution melting method. These results indicate that mutations achieved without chromosome modification by crossbreeding are effective for early and practical improvement of superior varieties and that efficient selection of mutants by reverse genetics is an effective method for the identification of genetic modifications. The edamame mutant populations developed in this study are believed to possess various useful alleles which may be applicable in the search for mutations that lead to improved edamame yield and eating quality beyond the flowering stage.