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Genome-Wide Analysis of MYB Transcription Factor Gene Superfamily Reveals BjPHL2a Involved in Modulating the Expression of BjCHI1 in Brassica juncea
is an economically important vegetable and oilseed crop. The MYB transcription factor superfamily is one of the largest transcription factor families in plants, and plays crucial roles in regulating the expression of key genes involved in a variety of physiological processes. However, a systematic a...
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| Published in: | Plants (Basel) 2023-02, Vol.12 (5), p.1011 |
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| container_issue | 5 |
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| container_title | Plants (Basel) |
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| creator | Xie, Chang Gen Jin, Ping Xu, Jiamin Li, Shangze Shi, Tiantian Wang, Rui Jia, Shuangwei Zhang, Zixuan Guo, Weike Hao, Wenfang Zhou, Xiaona Liu, Jun Gao, Ying |
| description | is an economically important vegetable and oilseed crop. The MYB transcription factor superfamily is one of the largest transcription factor families in plants, and plays crucial roles in regulating the expression of key genes involved in a variety of physiological processes. However, a systematic analysis of the MYB transcription factor genes in
has not been performed. In this study, a total of 502 BjMYB superfamily transcription factor genes were identified, including 23 1R-MYBs, 388 R2R3-MYBs, 16 3R-MYBs, 4 4R-MYBs, 7 atypical MYBs, and 64 MYB-CCs, which is approximately 2.4-fold larger than that of AtMYBs. Phylogenetic relationship analysis revealed that the MYB-CC subfamily consists of 64
genes. The expression pattern of members of PHL2 subclade homologous genes in
after
infection were determined, and
was isolated from a yeast one-hybrid screen with the promoter of
as bait.
was found to localize mainly in the nucleus of plant cells. An EMSA assay confirmed that
binds to the Wbl-4 element of
. Transiently expressed
activates expression of the GUS reporter system driven by a
mini-promoter in tobacco (
) leaves. Taken together, our data provide a comprehensive evaluation of
and show that
, one of the members of BjMYB-CCs, functions as a transcription activator by interacting with the Wbl-4 element in the promoter of
for targeted gene-inducible expression. |
| doi_str_mv | 10.3390/plants12051011 |
| format | article |
| fullrecord | <record><control><sourceid>proquest_doaj_</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_9c6c807be6974cada535fc59cf76a1f7</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_9c6c807be6974cada535fc59cf76a1f7</doaj_id><sourcerecordid>2786092958</sourcerecordid><originalsourceid>FETCH-LOGICAL-c485t-cb1ed3c761c87f3d768990656a92e91cf080b36c8f73d650443d09e26b23661c3</originalsourceid><addsrcrecordid>eNpdkk1rGzEQhpfS0gQ31x6LoJdenOhjV1qdSmyS2ODQ0qaUnoSsnXW07EpbadfU_6M_uHKchLhCIDF632c0zGTZe4LPGZP4om-1GyKhuCCYkFfZKaWUTYXIxesX95PsLMYGp1WmTfjb7IRxiVkp6Gn29wac72D601aALp1ud9FG5Gt0-2uG7oJ20QTbD9Y7dK3N4ANKBkDfxx5CrTvb7tA32IJuI5o1XxcrqtHSbX27hQpZh259NbZ6sG6DhntAV3_6ADHuaSnFrJkvlmQvmwWdokajZnQG9LvsTZ2IcPZ4TrIf11d388V09eVmOb9cTU1eFsPUrAlUzAhOTClqVgleSol5wbWkIImpU8Frxk1ZC1bxAuc5q7AEyteU8WRik2x54FZeN6oPttNhp7y26iHgw0bpMFjTgpImcbBYA5ciN7rSBStqU0hTC65JSjDJPh9Y_bjuoDLghqDbI-jxi7P3auO3iqTG5ELwRPj0SAj-9whxUJ2NBtrUZPBjVFSUHEsqizJJP_4nbfwYUvceVAXFCbcHnh9UJvgYA9TPvyFY7QdIHQ9QMnx4WcOz_Glc2D8JhcJN</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2785207636</pqid></control><display><type>article</type><title>Genome-Wide Analysis of MYB Transcription Factor Gene Superfamily Reveals BjPHL2a Involved in Modulating the Expression of BjCHI1 in Brassica juncea</title><source>Publicly Available Content Database</source><source>PubMed Central</source><creator>Xie, Chang Gen ; Jin, Ping ; Xu, Jiamin ; Li, Shangze ; Shi, Tiantian ; Wang, Rui ; Jia, Shuangwei ; Zhang, Zixuan ; Guo, Weike ; Hao, Wenfang ; Zhou, Xiaona ; Liu, Jun ; Gao, Ying</creator><creatorcontrib>Xie, Chang Gen ; Jin, Ping ; Xu, Jiamin ; Li, Shangze ; Shi, Tiantian ; Wang, Rui ; Jia, Shuangwei ; Zhang, Zixuan ; Guo, Weike ; Hao, Wenfang ; Zhou, Xiaona ; Liu, Jun ; Gao, Ying</creatorcontrib><description>is an economically important vegetable and oilseed crop. The MYB transcription factor superfamily is one of the largest transcription factor families in plants, and plays crucial roles in regulating the expression of key genes involved in a variety of physiological processes. However, a systematic analysis of the MYB transcription factor genes in
has not been performed. In this study, a total of 502 BjMYB superfamily transcription factor genes were identified, including 23 1R-MYBs, 388 R2R3-MYBs, 16 3R-MYBs, 4 4R-MYBs, 7 atypical MYBs, and 64 MYB-CCs, which is approximately 2.4-fold larger than that of AtMYBs. Phylogenetic relationship analysis revealed that the MYB-CC subfamily consists of 64
genes. The expression pattern of members of PHL2 subclade homologous genes in
after
infection were determined, and
was isolated from a yeast one-hybrid screen with the promoter of
as bait.
was found to localize mainly in the nucleus of plant cells. An EMSA assay confirmed that
binds to the Wbl-4 element of
. Transiently expressed
activates expression of the GUS reporter system driven by a
mini-promoter in tobacco (
) leaves. Taken together, our data provide a comprehensive evaluation of
and show that
, one of the members of BjMYB-CCs, functions as a transcription activator by interacting with the Wbl-4 element in the promoter of
for targeted gene-inducible expression.</description><identifier>ISSN: 2223-7747</identifier><identifier>EISSN: 2223-7747</identifier><identifier>DOI: 10.3390/plants12051011</identifier><identifier>PMID: 36903872</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Baits ; BjCHI1 ; BjMYB ; BjPHL2a ; Botrytis cinerea ; Brassica ; Brassica juncea ; Chromosomes ; Economic importance ; Fungi ; Gene expression ; Genes ; Genomes ; MYB transcription factors ; Oilseed crops ; Oilseeds ; Phylogenetics ; Phylogeny ; Physiological effects ; Plant cells ; Proteins ; Tobacco ; Transcription factors ; Yeasts</subject><ispartof>Plants (Basel), 2023-02, Vol.12 (5), p.1011</ispartof><rights>2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 by the authors. 2023</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c485t-cb1ed3c761c87f3d768990656a92e91cf080b36c8f73d650443d09e26b23661c3</citedby><cites>FETCH-LOGICAL-c485t-cb1ed3c761c87f3d768990656a92e91cf080b36c8f73d650443d09e26b23661c3</cites><orcidid>0000-0003-1338-523X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2785207636/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2785207636?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36903872$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xie, Chang Gen</creatorcontrib><creatorcontrib>Jin, Ping</creatorcontrib><creatorcontrib>Xu, Jiamin</creatorcontrib><creatorcontrib>Li, Shangze</creatorcontrib><creatorcontrib>Shi, Tiantian</creatorcontrib><creatorcontrib>Wang, Rui</creatorcontrib><creatorcontrib>Jia, Shuangwei</creatorcontrib><creatorcontrib>Zhang, Zixuan</creatorcontrib><creatorcontrib>Guo, Weike</creatorcontrib><creatorcontrib>Hao, Wenfang</creatorcontrib><creatorcontrib>Zhou, Xiaona</creatorcontrib><creatorcontrib>Liu, Jun</creatorcontrib><creatorcontrib>Gao, Ying</creatorcontrib><title>Genome-Wide Analysis of MYB Transcription Factor Gene Superfamily Reveals BjPHL2a Involved in Modulating the Expression of BjCHI1 in Brassica juncea</title><title>Plants (Basel)</title><addtitle>Plants (Basel)</addtitle><description>is an economically important vegetable and oilseed crop. The MYB transcription factor superfamily is one of the largest transcription factor families in plants, and plays crucial roles in regulating the expression of key genes involved in a variety of physiological processes. However, a systematic analysis of the MYB transcription factor genes in
has not been performed. In this study, a total of 502 BjMYB superfamily transcription factor genes were identified, including 23 1R-MYBs, 388 R2R3-MYBs, 16 3R-MYBs, 4 4R-MYBs, 7 atypical MYBs, and 64 MYB-CCs, which is approximately 2.4-fold larger than that of AtMYBs. Phylogenetic relationship analysis revealed that the MYB-CC subfamily consists of 64
genes. The expression pattern of members of PHL2 subclade homologous genes in
after
infection were determined, and
was isolated from a yeast one-hybrid screen with the promoter of
as bait.
was found to localize mainly in the nucleus of plant cells. An EMSA assay confirmed that
binds to the Wbl-4 element of
. Transiently expressed
activates expression of the GUS reporter system driven by a
mini-promoter in tobacco (
) leaves. Taken together, our data provide a comprehensive evaluation of
and show that
, one of the members of BjMYB-CCs, functions as a transcription activator by interacting with the Wbl-4 element in the promoter of
for targeted gene-inducible expression.</description><subject>Baits</subject><subject>BjCHI1</subject><subject>BjMYB</subject><subject>BjPHL2a</subject><subject>Botrytis cinerea</subject><subject>Brassica</subject><subject>Brassica juncea</subject><subject>Chromosomes</subject><subject>Economic importance</subject><subject>Fungi</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Genomes</subject><subject>MYB transcription factors</subject><subject>Oilseed crops</subject><subject>Oilseeds</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Physiological effects</subject><subject>Plant cells</subject><subject>Proteins</subject><subject>Tobacco</subject><subject>Transcription factors</subject><subject>Yeasts</subject><issn>2223-7747</issn><issn>2223-7747</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNpdkk1rGzEQhpfS0gQ31x6LoJdenOhjV1qdSmyS2ODQ0qaUnoSsnXW07EpbadfU_6M_uHKchLhCIDF632c0zGTZe4LPGZP4om-1GyKhuCCYkFfZKaWUTYXIxesX95PsLMYGp1WmTfjb7IRxiVkp6Gn29wac72D601aALp1ud9FG5Gt0-2uG7oJ20QTbD9Y7dK3N4ANKBkDfxx5CrTvb7tA32IJuI5o1XxcrqtHSbX27hQpZh259NbZ6sG6DhntAV3_6ADHuaSnFrJkvlmQvmwWdokajZnQG9LvsTZ2IcPZ4TrIf11d388V09eVmOb9cTU1eFsPUrAlUzAhOTClqVgleSol5wbWkIImpU8Frxk1ZC1bxAuc5q7AEyteU8WRik2x54FZeN6oPttNhp7y26iHgw0bpMFjTgpImcbBYA5ciN7rSBStqU0hTC65JSjDJPh9Y_bjuoDLghqDbI-jxi7P3auO3iqTG5ELwRPj0SAj-9whxUJ2NBtrUZPBjVFSUHEsqizJJP_4nbfwYUvceVAXFCbcHnh9UJvgYA9TPvyFY7QdIHQ9QMnx4WcOz_Glc2D8JhcJN</recordid><startdate>20230223</startdate><enddate>20230223</enddate><creator>Xie, Chang Gen</creator><creator>Jin, Ping</creator><creator>Xu, Jiamin</creator><creator>Li, Shangze</creator><creator>Shi, Tiantian</creator><creator>Wang, Rui</creator><creator>Jia, Shuangwei</creator><creator>Zhang, Zixuan</creator><creator>Guo, Weike</creator><creator>Hao, Wenfang</creator><creator>Zhou, Xiaona</creator><creator>Liu, Jun</creator><creator>Gao, Ying</creator><general>MDPI AG</general><general>MDPI</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7X2</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0003-1338-523X</orcidid></search><sort><creationdate>20230223</creationdate><title>Genome-Wide Analysis of MYB Transcription Factor Gene Superfamily Reveals BjPHL2a Involved in Modulating the Expression of BjCHI1 in Brassica juncea</title><author>Xie, Chang Gen ; Jin, Ping ; Xu, Jiamin ; Li, Shangze ; Shi, Tiantian ; Wang, Rui ; Jia, Shuangwei ; Zhang, Zixuan ; Guo, Weike ; Hao, Wenfang ; Zhou, Xiaona ; Liu, Jun ; Gao, Ying</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c485t-cb1ed3c761c87f3d768990656a92e91cf080b36c8f73d650443d09e26b23661c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Baits</topic><topic>BjCHI1</topic><topic>BjMYB</topic><topic>BjPHL2a</topic><topic>Botrytis cinerea</topic><topic>Brassica</topic><topic>Brassica juncea</topic><topic>Chromosomes</topic><topic>Economic importance</topic><topic>Fungi</topic><topic>Gene expression</topic><topic>Genes</topic><topic>Genomes</topic><topic>MYB transcription factors</topic><topic>Oilseed crops</topic><topic>Oilseeds</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Physiological effects</topic><topic>Plant cells</topic><topic>Proteins</topic><topic>Tobacco</topic><topic>Transcription factors</topic><topic>Yeasts</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xie, Chang Gen</creatorcontrib><creatorcontrib>Jin, Ping</creatorcontrib><creatorcontrib>Xu, Jiamin</creatorcontrib><creatorcontrib>Li, Shangze</creatorcontrib><creatorcontrib>Shi, Tiantian</creatorcontrib><creatorcontrib>Wang, Rui</creatorcontrib><creatorcontrib>Jia, Shuangwei</creatorcontrib><creatorcontrib>Zhang, Zixuan</creatorcontrib><creatorcontrib>Guo, Weike</creatorcontrib><creatorcontrib>Hao, Wenfang</creatorcontrib><creatorcontrib>Zhou, Xiaona</creatorcontrib><creatorcontrib>Liu, Jun</creatorcontrib><creatorcontrib>Gao, Ying</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Agricultural Science Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Plants (Basel)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xie, Chang Gen</au><au>Jin, Ping</au><au>Xu, Jiamin</au><au>Li, Shangze</au><au>Shi, Tiantian</au><au>Wang, Rui</au><au>Jia, Shuangwei</au><au>Zhang, Zixuan</au><au>Guo, Weike</au><au>Hao, Wenfang</au><au>Zhou, Xiaona</au><au>Liu, Jun</au><au>Gao, Ying</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Analysis of MYB Transcription Factor Gene Superfamily Reveals BjPHL2a Involved in Modulating the Expression of BjCHI1 in Brassica juncea</atitle><jtitle>Plants (Basel)</jtitle><addtitle>Plants (Basel)</addtitle><date>2023-02-23</date><risdate>2023</risdate><volume>12</volume><issue>5</issue><spage>1011</spage><pages>1011-</pages><issn>2223-7747</issn><eissn>2223-7747</eissn><abstract>is an economically important vegetable and oilseed crop. The MYB transcription factor superfamily is one of the largest transcription factor families in plants, and plays crucial roles in regulating the expression of key genes involved in a variety of physiological processes. However, a systematic analysis of the MYB transcription factor genes in
has not been performed. In this study, a total of 502 BjMYB superfamily transcription factor genes were identified, including 23 1R-MYBs, 388 R2R3-MYBs, 16 3R-MYBs, 4 4R-MYBs, 7 atypical MYBs, and 64 MYB-CCs, which is approximately 2.4-fold larger than that of AtMYBs. Phylogenetic relationship analysis revealed that the MYB-CC subfamily consists of 64
genes. The expression pattern of members of PHL2 subclade homologous genes in
after
infection were determined, and
was isolated from a yeast one-hybrid screen with the promoter of
as bait.
was found to localize mainly in the nucleus of plant cells. An EMSA assay confirmed that
binds to the Wbl-4 element of
. Transiently expressed
activates expression of the GUS reporter system driven by a
mini-promoter in tobacco (
) leaves. Taken together, our data provide a comprehensive evaluation of
and show that
, one of the members of BjMYB-CCs, functions as a transcription activator by interacting with the Wbl-4 element in the promoter of
for targeted gene-inducible expression.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>36903872</pmid><doi>10.3390/plants12051011</doi><orcidid>https://orcid.org/0000-0003-1338-523X</orcidid><oa>free_for_read</oa></addata></record> |
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| ispartof | Plants (Basel), 2023-02, Vol.12 (5), p.1011 |
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| source | Publicly Available Content Database; PubMed Central |
| subjects | Baits BjCHI1 BjMYB BjPHL2a Botrytis cinerea Brassica Brassica juncea Chromosomes Economic importance Fungi Gene expression Genes Genomes MYB transcription factors Oilseed crops Oilseeds Phylogenetics Phylogeny Physiological effects Plant cells Proteins Tobacco Transcription factors Yeasts |
| title | Genome-Wide Analysis of MYB Transcription Factor Gene Superfamily Reveals BjPHL2a Involved in Modulating the Expression of BjCHI1 in Brassica juncea |
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