Parameters for burst detection

• Published in: Frontiers in computational neuroscience 2014-01, Vol.7, p.193-193
• Main Authors: Bakkum, Douglas J, Radivojevic, Milos, Frey, Urs, Franke, Felix, Hierlemann, Andreas, Takahashi, Hirokazu
• Format: Article
• Language: English
• Subjects: Algorithms; Burst detection; cell culture; Information Processing; Methods; microelectrode array; network dynamics; Neural networks; Neuroscience; Neurosciences; Probability distribution; Sensors
• ISSN: 1662-5188; 1662-5188
• DOI: 10.3389/fncom.2013.00193

Bursts of action potentials within neurons and throughout networks are believed to serve roles in how neurons handle and store information, both in vivo and in vitro. Accurate detection of burst occurrences and durations are therefore crucial for many studies. A number of algorithms have been proposed to do so, but a standard method has not been adopted. This is due, in part, to many algorithms requiring the adjustment of multiple ad-hoc parameters and further post-hoc criteria in order to produce satisfactory results. Here, we broadly catalog existing approaches and present a new approach requiring the selection of only a single parameter: the number of spikes N comprising the smallest burst to consider. A burst was identified if N spikes occurred in less than T ms, where the threshold T was automatically determined from observing a probability distribution of inter-spike-intervals. Performance was compared vs. different classes of detectors on data gathered from in vitro neuronal networks grown over microelectrode arrays. Our approach offered a number of useful features including: a simple implementation, no need for ad-hoc or post-hoc criteria, and precise assignment of burst boundary time points. Unlike existing approaches, detection was not biased toward larger bursts, allowing identification and analysis of a greater range of neuronal and network dynamics.