Genome-wide characterization of the MBF1 gene family and its expression pattern in different tissues and stresses in Zanthoxylum armatum

• Published in: BMC genomics 2022-09, Vol.23 (1), p.1-652, Article 652
• Main Authors: Hui, Wenkai, Zheng, Hao, Fan, Jiangtao, Wang, Jingyan, Saba, Tahseen, Wang, Kai, Wu, Jiaojiao, Wu, Han, Zhong, Yu, Chen, Gang, Gong, Wei
• Format: Article
• Language: English
• Subjects: Abiotic stress; Arabidopsis thaliana; Binding sites; Chromosomes; Citrus sinensis; Collinearity; Condiments; Expression pattern; Flavorings; Gene expression; Genes; Genomes; Genomics; Ginkgo biloba; Health aspects; MBF1; MBF1 gene; Medicinal plants; Methods; Methyl jasmonate; Microorganisms; Oryza sativa; Pharmaceutical industry; Phylogenetics; Plant hormones; Plant resistance; Populus trichocarpa; Proteins; Salicylic acid; Seeds; Species; Stress response; Stresses; Transcription factors; Transcriptional coactivators; Waterlogging; Zanthoxylum armatum
• ISSN: 1471-2164; 1471-2164
• DOI: 10.1186/s12864-022-08863-4

Multiprotein bridging factor 1 (MBF1) is a crucial transcriptional coactivator in animals, plants, and some microorganisms, that plays a necessary role in growth development and stress tolerance. Zanthoxylum armatum is an important perennial plant for the condiments and pharmaceutical industries, whereas the potential information in the genes related to stress resistance remains poorly understood in Z. armatum. Herein, six representative species were selected for use in a genome-wide investigation of the MBF1 family, including Arabidopsis thaliana, Oryza sativa, Populus trichocarpa, Citrus sinensis, Ginkgo biloba, and Z. armatum. The results showed that the MBF1 genes could be divided into two groups: Group I contained the MBF1a and MBF1b subfamilies, and group II was independent of the MBF1c subfamily.. Most species have at least two different MBF1 genes, and MBF1c is usually an essential member. The three ZaMBF1 genes were respectively located on ZaChr26, ZaChr32, and ZaChr4 of Zanthoxylum chromosomes. The collinearity were occurred between three ZaMBF1 genes, and ZaMBF1c showed the collinearity between Z. armatum and both P. trichocarpa and C. sinensis. Moreover, many cis-elements associated with abiotic stress and phytohormone pathways were detected in the promoter regions of MBF1 of six representative species. The ERF binding sites were the most abundant targets in the sequences of the ZaMBF1 family, and some transcription factor sites related to floral differentiation were also identified in ZaMBF1c, such as MADS, LFY, Dof, and AP2. ZaMBF1a was observed to be very highly expressed in 25 different samples except in the seeds, and ZaMBF1c may be associated with the male and female floral initiation processes. In addition, expression in all the ZaMBF1 genes could be significantly induced by water-logging, cold stress, ethephon, methyl jasmonate, and salicylic acid treatments, especially in ZaMBF1c. The present study carried out a comprehensive bioinformatic investigation related to the MBF1 family in six representative species, and the responsiveness of ZaMBF1 genes to various abiotic stresses and phytohormone inductions was also revealed. This work not only lays a solid foundation to uncover the biological roles of the ZaMBF1 family in Z. armatum, but also provides some broad references for conducting the MBF1 research in other plants.