Multi-omics analyses based on genes associated with oxidative stress and phospholipid metabolism revealed the intrinsic molecular characteristics of pancreatic cancer

• Published in: Scientific reports 2023-08, Vol.13 (1), p.13564-13564, Article 13564
• Main Authors: Wang, Hongdong, Guo, Hui, Sun, Jiaao, Wang, Yuefeng
• Format: Article
• Language: English
• Subjects: 631/114; 631/67; Carcinoma; Gene expression; Genomes; Genotypes; Humanities and Social Sciences; Humans; Immune checkpoint; Lipid metabolism; Lymphocytes T; Matrix Metalloproteinase 14; Medical prognosis; Metabolism; Metabolites; Metabolomics; Metastases; multidisciplinary; Multiomics; Oxidative metabolism; Oxidative stress; Oxidative Stress - genetics; Pancreatic cancer; Pancreatic Neoplasms; Pancreatic Neoplasms - genetics; Phospholipids; Polymerase chain reaction; Prognosis; Regression analysis; Reverse transcription; Risk groups; Science; Science (multidisciplinary); Tissues; Transcriptomics; Tumor microenvironment; Tumor Microenvironment - genetics; Tumors
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/s41598-023-40560-4

Oxidative stress (OS), which impacts lipid metabolic reprogramming, can affect the biological activities of cancer cells. How oxidative stress and phospholipid metabolism (OSPM) influence the prognosis of pancreatic cancer (PC) needs to be elucidated. The metabolic data of 35 pancreatic tumor samples, 34 para-carcinoma samples, and 31 normal pancreatic tissues were obtained from the previously published literature. Pan-cancer samples were obtained from The Cancer Genome Atlas (TCGA). And the Gene Expression Omnibus (GEO), International Cancer Genome Consortium (ICGC), ArrayExpress, and the Genotype-Tissue Expression (GTEx) databases were searched for more PC and normal pancreatic samples. The metabolites in PC were compared with normal and para-carcinoma tissues. The characteristics of the key OSPM genes were summarized in pan-cancer. The random survival forest analysis and multivariate Cox regression analysis were utilized to construct an OSPM-related signature. Based on this signature, PC samples were divided into high- and low-risk subgroups. The dysregulations of the tumor immune microenvironment were further investigated. Quantitative reverse transcription polymerase chain reaction (qRT-PCR) was conducted to investigate the expression of genes in the signature in PC and normal tissues. The protein levels of these genes were further demonstrated. In PC, metabolomic studies revealed the alteration of PM, while transcriptomic studies showed different expressions of OSPM-related genes. Then 930 PC samples were divided into three subtypes with different prognoses, and an OSPM-related signature including eight OSPM-related genes (i.e., SLC2A1, MMP14, TOP2A, MBOAT2, ANLN, ECT2, SLC22A3, and FGD6) was developed. High- and low-risk subgroups divided by the signature showed different prognoses, expression levels of immune checkpoint genes, immune cell infiltration, and tumor microenvironment. The risk score was negatively correlated with the proportion of TIL, pDC, Mast cell, and T cell co-stimulation. The expression levels of genes in the signature were verified in PC and normal samples. The protein levels of SLC2A1, MMP14, TOP2A, MBOAT2, ANLN, and SLC22A3 showed up-regulation in PC samples compared with normal tissues. After integrating metabolomics and transcriptomics data, the alterations in OSPM in PC were investigated, and an OSPM-related signature was developed, which was helpful for the prognostic assessment and individualized treatment for PC.