SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise

Japan has reported 26 cases of coronavirus disease 2019 (COVID-19) linked to cruise tours on the River Nile in Egypt between March 5 and 15, 2020. Here, we characterized the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome of isolates from 10 travelers who returned from Egypt and...

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Published in:Frontiers in microbiology 2020-06, Vol.11, p.1316
Main Authors: Sekizuka, Tsuyoshi, Kuramoto, Sanae, Nariai, Eri, Taira, Masakatsu, Hachisu, Yushi, Tokaji, Akihiko, Shinohara, Michiyo, Kishimoto, Tsuyoshi, Itokawa, Kentaro, Kobayashi, Yusuke, Kadokura, Keisuke, Kamiya, Hajime, Matsui, Tamano, Suzuki, Motoi, Kuroda, Makoto
Format: Article
Language:English
Subjects:
cruise ship
genome epidemiology
haplotype network
imported case
Microbiology
single-nucleotide variations
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container_title Frontiers in microbiology
container_volume 11
creator Sekizuka, Tsuyoshi
Kuramoto, Sanae
Nariai, Eri
Taira, Masakatsu
Hachisu, Yushi
Tokaji, Akihiko
Shinohara, Michiyo
Kishimoto, Tsuyoshi
Itokawa, Kentaro
Kobayashi, Yusuke
Kadokura, Keisuke
Kamiya, Hajime
Matsui, Tamano
Suzuki, Motoi
Kuroda, Makoto
description Japan has reported 26 cases of coronavirus disease 2019 (COVID-19) linked to cruise tours on the River Nile in Egypt between March 5 and 15, 2020. Here, we characterized the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome of isolates from 10 travelers who returned from Egypt and from patients possibly associated with these travelers. We performed haplotype network analysis of SARS-CoV-2 isolates using genome-wide single-nucleotide variations. Our analysis identified two potential Egypt-related clusters from these imported cases, and these clusters were related to globally detected viruses in different countries.
doi_str_mv 10.3389/fmicb.2020.01316
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subjects cruise ship
genome epidemiology
haplotype network
imported case
Microbiology
single-nucleotide variations
title SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise
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