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Proteome-Wide Mendelian Randomisation Identifies Causal Links of Plasma Proteins With Periodontitis
Periodontitis is a complex and multifactorial disease and it is challenging to decipher its underlying causes and mechanisms. This study attempted to explore potential circulating proteins in connection to periodontitis through proteome-wide Mendelian randomisation (MR). We analysed 1722 circulating...
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Published in: | International dental journal 2024-12, Vol.74 (6), p.1258-1265 |
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description | Periodontitis is a complex and multifactorial disease and it is challenging to decipher its underlying causes and mechanisms. This study attempted to explore potential circulating proteins in connection to periodontitis through proteome-wide Mendelian randomisation (MR).
We analysed 1722 circulating proteins to identify prospective drug targets for tackling periodontitis, using the genomic dataset from the FinnGen study. Two-sample MR was conducted to evaluate the bidirectional relationship between circulating proteins and periodontitis risk. A dataset from the UK Biobank was used to validate the findings. Single-cell analysis was performed to assess the cellular expression of the identified proteins within gingival tissues.
MR analyses found that genetically predicted circulating levels of von Willebrand factor A domain-containing 1 (von Willebrand factor A domain containing 1 [VWA1], odds ratios: 0.94, 95% CI 0.92-0.97, P = 1.28 × 10−5) were inversely associated with periodontitis. In contrast, the level of growth differentiation factor 15 (growth differentiation factor 15 [GDF15], odds ratios: 1.05, 95% CI 1.02-1.07, P = 2.12 × 10−5) might be associated with an increased risk of periodontitis. Single-cell analysis indicated that VWA1 was primarily expressed in endothelial cells of healthy gingival tissues, while the main source of GDF15 was not derived from periodontal cells.
The present study suggests that certain plasma proteins like VWA1 and GDF15 may be potentially indicative of the risk and susceptibility to periodontitis. These proteins could possibly be the potential therapeutic targets for treating periodontitis, and further investigation is highly warranted. |
doi_str_mv | 10.1016/j.identj.2024.04.019 |
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We analysed 1722 circulating proteins to identify prospective drug targets for tackling periodontitis, using the genomic dataset from the FinnGen study. Two-sample MR was conducted to evaluate the bidirectional relationship between circulating proteins and periodontitis risk. A dataset from the UK Biobank was used to validate the findings. Single-cell analysis was performed to assess the cellular expression of the identified proteins within gingival tissues.
MR analyses found that genetically predicted circulating levels of von Willebrand factor A domain-containing 1 (von Willebrand factor A domain containing 1 [VWA1], odds ratios: 0.94, 95% CI 0.92-0.97, P = 1.28 × 10−5) were inversely associated with periodontitis. In contrast, the level of growth differentiation factor 15 (growth differentiation factor 15 [GDF15], odds ratios: 1.05, 95% CI 1.02-1.07, P = 2.12 × 10−5) might be associated with an increased risk of periodontitis. Single-cell analysis indicated that VWA1 was primarily expressed in endothelial cells of healthy gingival tissues, while the main source of GDF15 was not derived from periodontal cells.
The present study suggests that certain plasma proteins like VWA1 and GDF15 may be potentially indicative of the risk and susceptibility to periodontitis. These proteins could possibly be the potential therapeutic targets for treating periodontitis, and further investigation is highly warranted.</description><identifier>ISSN: 0020-6539</identifier><identifier>ISSN: 1875-595X</identifier><identifier>EISSN: 1875-595X</identifier><identifier>DOI: 10.1016/j.identj.2024.04.019</identifier><identifier>PMID: 38729796</identifier><language>eng</language><publisher>England: Elsevier Inc</publisher><subject>Blood Proteins - analysis ; Female ; Growth Differentiation Factor 15 - blood ; Growth Differentiation Factor 15 - genetics ; Growth Differentiation Factor 15 - metabolism ; Humans ; Male ; Mendelian randomisation ; Mendelian Randomization Analysis ; Middle Aged ; Periodontitis ; Periodontitis - blood ; Periodontitis - genetics ; Protein ; Proteome - analysis ; Scientific Research Report ; Single-Cell Analysis ; Therapeutic target</subject><ispartof>International dental journal, 2024-12, Vol.74 (6), p.1258-1265</ispartof><rights>2024 The Authors</rights><rights>Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.</rights><rights>2024 The Authors 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c479t-386e9ad95c095197d8d1092c00ff2571cc0d3b813f0e7bffb94a235db6d8df683</cites><orcidid>0000-0002-2614-9159</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11551566/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0020653924001230$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,3549,27924,27925,45780,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38729796$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhan, Chaoning</creatorcontrib><creatorcontrib>Zhu, Yuexin</creatorcontrib><creatorcontrib>Fok, Melissa Rachel</creatorcontrib><creatorcontrib>Jin, Lijian</creatorcontrib><creatorcontrib>Han, Bing</creatorcontrib><creatorcontrib>Lin, Yifan</creatorcontrib><title>Proteome-Wide Mendelian Randomisation Identifies Causal Links of Plasma Proteins With Periodontitis</title><title>International dental journal</title><addtitle>Int Dent J</addtitle><description>Periodontitis is a complex and multifactorial disease and it is challenging to decipher its underlying causes and mechanisms. This study attempted to explore potential circulating proteins in connection to periodontitis through proteome-wide Mendelian randomisation (MR).
We analysed 1722 circulating proteins to identify prospective drug targets for tackling periodontitis, using the genomic dataset from the FinnGen study. Two-sample MR was conducted to evaluate the bidirectional relationship between circulating proteins and periodontitis risk. A dataset from the UK Biobank was used to validate the findings. Single-cell analysis was performed to assess the cellular expression of the identified proteins within gingival tissues.
MR analyses found that genetically predicted circulating levels of von Willebrand factor A domain-containing 1 (von Willebrand factor A domain containing 1 [VWA1], odds ratios: 0.94, 95% CI 0.92-0.97, P = 1.28 × 10−5) were inversely associated with periodontitis. In contrast, the level of growth differentiation factor 15 (growth differentiation factor 15 [GDF15], odds ratios: 1.05, 95% CI 1.02-1.07, P = 2.12 × 10−5) might be associated with an increased risk of periodontitis. Single-cell analysis indicated that VWA1 was primarily expressed in endothelial cells of healthy gingival tissues, while the main source of GDF15 was not derived from periodontal cells.
The present study suggests that certain plasma proteins like VWA1 and GDF15 may be potentially indicative of the risk and susceptibility to periodontitis. These proteins could possibly be the potential therapeutic targets for treating periodontitis, and further investigation is highly warranted.</description><subject>Blood Proteins - analysis</subject><subject>Female</subject><subject>Growth Differentiation Factor 15 - blood</subject><subject>Growth Differentiation Factor 15 - genetics</subject><subject>Growth Differentiation Factor 15 - metabolism</subject><subject>Humans</subject><subject>Male</subject><subject>Mendelian randomisation</subject><subject>Mendelian Randomization Analysis</subject><subject>Middle Aged</subject><subject>Periodontitis</subject><subject>Periodontitis - blood</subject><subject>Periodontitis - genetics</subject><subject>Protein</subject><subject>Proteome - analysis</subject><subject>Scientific Research Report</subject><subject>Single-Cell Analysis</subject><subject>Therapeutic target</subject><issn>0020-6539</issn><issn>1875-595X</issn><issn>1875-595X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNp9kUFv1DAQhSMEotvCP0AoRy5Zxo7txBcQWkFZaRErBCo3y7HHrUMSt3a2Ev8eb1MqekEayZL95nvjeUXxisCaABFv-7W3OM39mgJla8hF5JNiRdqGV1zyn0-LFQCFSvBanhSnKfUArK1BPC9O6rahspFiVZh9DDOGEauLjCu_4GRx8Hoqv-nJhtEnPfswldujlXceU7nRh6SHcuenX6kMrtwPOo26vOP4KZUXfr4q9xh9sCH3zD69KJ45PSR8eX-eFT8-ffy--Vztvp5vNx92lWGNnKu6FSi1ldyA5EQ2trUEJDUAzlHeEGPA1l1LagfYdM51kmlac9uJrHSirc-K7cK1QffqOvpRx98qaK_uLkK8VDrO3gyoNJOt6bhpCFIGgrRSd1LQhnHHGDCZWe8X1vWhG9Ga_P2oh0fQxy-Tv1KX4VYRwjnhQmTCm3tCDDcHTLPK2zQ4DHrCcEiqhhxMw6ikWcoWqYkhpYjuwYeAOoaterWErY5hK8hFjjO-_nfGh6a_6WbBu0WAeeu3HqNKxuNk0PqIZs5r8f93-ANPzL6E</recordid><startdate>20241201</startdate><enddate>20241201</enddate><creator>Zhan, Chaoning</creator><creator>Zhu, Yuexin</creator><creator>Fok, Melissa Rachel</creator><creator>Jin, Lijian</creator><creator>Han, Bing</creator><creator>Lin, Yifan</creator><general>Elsevier Inc</general><general>Elsevier</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-2614-9159</orcidid></search><sort><creationdate>20241201</creationdate><title>Proteome-Wide Mendelian Randomisation Identifies Causal Links of Plasma Proteins With Periodontitis</title><author>Zhan, Chaoning ; Zhu, Yuexin ; Fok, Melissa Rachel ; Jin, Lijian ; Han, Bing ; Lin, Yifan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c479t-386e9ad95c095197d8d1092c00ff2571cc0d3b813f0e7bffb94a235db6d8df683</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Blood Proteins - analysis</topic><topic>Female</topic><topic>Growth Differentiation Factor 15 - blood</topic><topic>Growth Differentiation Factor 15 - genetics</topic><topic>Growth Differentiation Factor 15 - metabolism</topic><topic>Humans</topic><topic>Male</topic><topic>Mendelian randomisation</topic><topic>Mendelian Randomization Analysis</topic><topic>Middle Aged</topic><topic>Periodontitis</topic><topic>Periodontitis - blood</topic><topic>Periodontitis - genetics</topic><topic>Protein</topic><topic>Proteome - analysis</topic><topic>Scientific Research Report</topic><topic>Single-Cell Analysis</topic><topic>Therapeutic target</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhan, Chaoning</creatorcontrib><creatorcontrib>Zhu, Yuexin</creatorcontrib><creatorcontrib>Fok, Melissa Rachel</creatorcontrib><creatorcontrib>Jin, Lijian</creatorcontrib><creatorcontrib>Han, Bing</creatorcontrib><creatorcontrib>Lin, Yifan</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>International dental journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhan, Chaoning</au><au>Zhu, Yuexin</au><au>Fok, Melissa Rachel</au><au>Jin, Lijian</au><au>Han, Bing</au><au>Lin, Yifan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Proteome-Wide Mendelian Randomisation Identifies Causal Links of Plasma Proteins With Periodontitis</atitle><jtitle>International dental journal</jtitle><addtitle>Int Dent J</addtitle><date>2024-12-01</date><risdate>2024</risdate><volume>74</volume><issue>6</issue><spage>1258</spage><epage>1265</epage><pages>1258-1265</pages><issn>0020-6539</issn><issn>1875-595X</issn><eissn>1875-595X</eissn><abstract>Periodontitis is a complex and multifactorial disease and it is challenging to decipher its underlying causes and mechanisms. This study attempted to explore potential circulating proteins in connection to periodontitis through proteome-wide Mendelian randomisation (MR).
We analysed 1722 circulating proteins to identify prospective drug targets for tackling periodontitis, using the genomic dataset from the FinnGen study. Two-sample MR was conducted to evaluate the bidirectional relationship between circulating proteins and periodontitis risk. A dataset from the UK Biobank was used to validate the findings. Single-cell analysis was performed to assess the cellular expression of the identified proteins within gingival tissues.
MR analyses found that genetically predicted circulating levels of von Willebrand factor A domain-containing 1 (von Willebrand factor A domain containing 1 [VWA1], odds ratios: 0.94, 95% CI 0.92-0.97, P = 1.28 × 10−5) were inversely associated with periodontitis. In contrast, the level of growth differentiation factor 15 (growth differentiation factor 15 [GDF15], odds ratios: 1.05, 95% CI 1.02-1.07, P = 2.12 × 10−5) might be associated with an increased risk of periodontitis. Single-cell analysis indicated that VWA1 was primarily expressed in endothelial cells of healthy gingival tissues, while the main source of GDF15 was not derived from periodontal cells.
The present study suggests that certain plasma proteins like VWA1 and GDF15 may be potentially indicative of the risk and susceptibility to periodontitis. These proteins could possibly be the potential therapeutic targets for treating periodontitis, and further investigation is highly warranted.</abstract><cop>England</cop><pub>Elsevier Inc</pub><pmid>38729796</pmid><doi>10.1016/j.identj.2024.04.019</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-2614-9159</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Blood Proteins - analysis Female Growth Differentiation Factor 15 - blood Growth Differentiation Factor 15 - genetics Growth Differentiation Factor 15 - metabolism Humans Male Mendelian randomisation Mendelian Randomization Analysis Middle Aged Periodontitis Periodontitis - blood Periodontitis - genetics Protein Proteome - analysis Scientific Research Report Single-Cell Analysis Therapeutic target |
title | Proteome-Wide Mendelian Randomisation Identifies Causal Links of Plasma Proteins With Periodontitis |
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