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Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation
( ) is an economically important forest tree species, often cultivated in continuous monoculture as a coastal protection forest. Continuous planting has gradually affected growth and severely restricted the sustainable development of the industry. In this study, we analyzed the effects of continuous...
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Published in: | Frontiers in plant science 2023-12, Vol.14, p.1324184-1324184 |
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creator | Wang, Yuhua Lin, Shaoxiong Li, Jianjuan Jia, Xiaoli Hu, Mingyue Cai, Yuhong Cheng, Pengyuan Li, Mingzhe Chen, Yiling Lin, Wenxiong Wang, Haibin Wu, Zeyan |
description | (
) is an economically important forest tree species, often cultivated in continuous monoculture as a coastal protection forest. Continuous planting has gradually affected growth and severely restricted the sustainable development of the
industry. In this study, we analyzed the effects of continuous planting on
growth and explored the rhizosphere soil microecological mechanism from a metagenomic perspective. The results showed that continuous planting resulted in dwarfing, shorter root length, and reduced
seedling root system. Metagenomics analysis showed that 10 key characteristic microorganisms, mainly
,
, and
, were responsible for continuously planted
trees. Quantitative analysis showed that the number of microorganisms in these three genera decreased significantly with the increase of continuous planting. Gene function analysis showed that continuous planting led to the weakening of the environmental information processing-signal transduction ability of soil characteristic microorganisms, and the decrease of
trees against stress. Reduced capacity for metabolism, genetic information processing-replication and repair resulted in reduced microbial propagation and reduced microbial quantity in the rhizosphere soil of
trees. Secondly, amino acid metabolism, carbohydrate metabolism, glycan biosynthesis and metabolism, lipid metabolism, metabolism of cofactors and vitamins were all significantly reduced, resulting in a decrease in the ability of the soil to synthesize and metabolize carbon and nitrogen. These reduced capacities further led to reduced soil microbial quantity, microbial carbon and nitrogen, microbial respiration intensity, reduced soil enzyme nutrient cycling and resistance-related enzyme activities, a significant reduction in available nutrient content of rhizosphere soils, a reduction in the ion exchange capacity, and an impediment to
growth. This study provides an important basis for the management of continuously planted
plantations. |
doi_str_mv | 10.3389/fpls.2023.1324184 |
format | article |
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) is an economically important forest tree species, often cultivated in continuous monoculture as a coastal protection forest. Continuous planting has gradually affected growth and severely restricted the sustainable development of the
industry. In this study, we analyzed the effects of continuous planting on
growth and explored the rhizosphere soil microecological mechanism from a metagenomic perspective. The results showed that continuous planting resulted in dwarfing, shorter root length, and reduced
seedling root system. Metagenomics analysis showed that 10 key characteristic microorganisms, mainly
,
, and
, were responsible for continuously planted
trees. Quantitative analysis showed that the number of microorganisms in these three genera decreased significantly with the increase of continuous planting. Gene function analysis showed that continuous planting led to the weakening of the environmental information processing-signal transduction ability of soil characteristic microorganisms, and the decrease of
trees against stress. Reduced capacity for metabolism, genetic information processing-replication and repair resulted in reduced microbial propagation and reduced microbial quantity in the rhizosphere soil of
trees. Secondly, amino acid metabolism, carbohydrate metabolism, glycan biosynthesis and metabolism, lipid metabolism, metabolism of cofactors and vitamins were all significantly reduced, resulting in a decrease in the ability of the soil to synthesize and metabolize carbon and nitrogen. These reduced capacities further led to reduced soil microbial quantity, microbial carbon and nitrogen, microbial respiration intensity, reduced soil enzyme nutrient cycling and resistance-related enzyme activities, a significant reduction in available nutrient content of rhizosphere soils, a reduction in the ion exchange capacity, and an impediment to
growth. This study provides an important basis for the management of continuously planted
plantations.</description><identifier>ISSN: 1664-462X</identifier><identifier>EISSN: 1664-462X</identifier><identifier>DOI: 10.3389/fpls.2023.1324184</identifier><identifier>PMID: 38126014</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>C. equisetifolia ; continuous planting ; gene function ; metagenome ; nutrient transformation ; Plant Science ; soil enzymes</subject><ispartof>Frontiers in plant science, 2023-12, Vol.14, p.1324184-1324184</ispartof><rights>Copyright © 2023 Wang, Lin, Li, Jia, Hu, Cai, Cheng, Li, Chen, Lin, Wang and Wu.</rights><rights>Copyright © 2023 Wang, Lin, Li, Jia, Hu, Cai, Cheng, Li, Chen, Lin, Wang and Wu 2023 Wang, Lin, Li, Jia, Hu, Cai, Cheng, Li, Chen, Lin, Wang and Wu</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c466t-74470dfe27ef9ff117a957a1d8cac7aec1787eb43d06b71705cb2ba377584dfe3</citedby><cites>FETCH-LOGICAL-c466t-74470dfe27ef9ff117a957a1d8cac7aec1787eb43d06b71705cb2ba377584dfe3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10731376/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10731376/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38126014$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Yuhua</creatorcontrib><creatorcontrib>Lin, Shaoxiong</creatorcontrib><creatorcontrib>Li, Jianjuan</creatorcontrib><creatorcontrib>Jia, Xiaoli</creatorcontrib><creatorcontrib>Hu, Mingyue</creatorcontrib><creatorcontrib>Cai, Yuhong</creatorcontrib><creatorcontrib>Cheng, Pengyuan</creatorcontrib><creatorcontrib>Li, Mingzhe</creatorcontrib><creatorcontrib>Chen, Yiling</creatorcontrib><creatorcontrib>Lin, Wenxiong</creatorcontrib><creatorcontrib>Wang, Haibin</creatorcontrib><creatorcontrib>Wu, Zeyan</creatorcontrib><title>Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation</title><title>Frontiers in plant science</title><addtitle>Front Plant Sci</addtitle><description>(
) is an economically important forest tree species, often cultivated in continuous monoculture as a coastal protection forest. Continuous planting has gradually affected growth and severely restricted the sustainable development of the
industry. In this study, we analyzed the effects of continuous planting on
growth and explored the rhizosphere soil microecological mechanism from a metagenomic perspective. The results showed that continuous planting resulted in dwarfing, shorter root length, and reduced
seedling root system. Metagenomics analysis showed that 10 key characteristic microorganisms, mainly
,
, and
, were responsible for continuously planted
trees. Quantitative analysis showed that the number of microorganisms in these three genera decreased significantly with the increase of continuous planting. Gene function analysis showed that continuous planting led to the weakening of the environmental information processing-signal transduction ability of soil characteristic microorganisms, and the decrease of
trees against stress. Reduced capacity for metabolism, genetic information processing-replication and repair resulted in reduced microbial propagation and reduced microbial quantity in the rhizosphere soil of
trees. Secondly, amino acid metabolism, carbohydrate metabolism, glycan biosynthesis and metabolism, lipid metabolism, metabolism of cofactors and vitamins were all significantly reduced, resulting in a decrease in the ability of the soil to synthesize and metabolize carbon and nitrogen. These reduced capacities further led to reduced soil microbial quantity, microbial carbon and nitrogen, microbial respiration intensity, reduced soil enzyme nutrient cycling and resistance-related enzyme activities, a significant reduction in available nutrient content of rhizosphere soils, a reduction in the ion exchange capacity, and an impediment to
growth. This study provides an important basis for the management of continuously planted
plantations.</description><subject>C. equisetifolia</subject><subject>continuous planting</subject><subject>gene function</subject><subject>metagenome</subject><subject>nutrient transformation</subject><subject>Plant Science</subject><subject>soil enzymes</subject><issn>1664-462X</issn><issn>1664-462X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVUk1vEzEQXSEQrUp_ABfkI5cEf2W9e0Io4qNSEReQuFmz3nHismuntpeSn9d_VmcTqtYX2-M3741nXlW9ZXQpRNN-sLshLTnlYskEl6yRL6pzVtdyIWv---WT81l1mdINLWtFaduq19WZaBivKZPn1f13zLBBH0Zn0qKDhD3Bf7shRMgueBIs-YN7koIbSIHEEOIGvEtjIib4HF03Zec3JIf57vwUpjTsyW4AnwvXGtIE0XkgeDu5hNnZMDggmxju8pY4v3Wdm5XA9yRv0cUSzBjBHKKJ3LkCm-X9VOTQZ5Ij-GRDHOcS31SvLAwJL0_7RfXry-ef62-L6x9fr9afrhdG1nVeKCkV7S1yhba1ljEF7UoB6xsDRgEaphqFnRQ9rTvFFF2ZjncglFo1suSJi-rqyNsHuNG76EaIex3A6TlQ-qIhZmcG1NBJZgwzPdRSyg6bvocGLa-NtFw0TeH6eOTaTd2IvSm_ijA8I33-4t1Wb8JfzagSTKi6MLw_McRwO2HKenTJ4FDajmUCmrdUrpTkkhYoO0LL9FKKaB91GNUHK-mDlfTBSvpkpZLz7mmBjxn_jSMeAHFTz4c</recordid><startdate>20231206</startdate><enddate>20231206</enddate><creator>Wang, Yuhua</creator><creator>Lin, Shaoxiong</creator><creator>Li, Jianjuan</creator><creator>Jia, Xiaoli</creator><creator>Hu, Mingyue</creator><creator>Cai, Yuhong</creator><creator>Cheng, Pengyuan</creator><creator>Li, Mingzhe</creator><creator>Chen, Yiling</creator><creator>Lin, Wenxiong</creator><creator>Wang, Haibin</creator><creator>Wu, Zeyan</creator><general>Frontiers Media S.A</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20231206</creationdate><title>Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation</title><author>Wang, Yuhua ; Lin, Shaoxiong ; Li, Jianjuan ; Jia, Xiaoli ; Hu, Mingyue ; Cai, Yuhong ; Cheng, Pengyuan ; Li, Mingzhe ; Chen, Yiling ; Lin, Wenxiong ; Wang, Haibin ; Wu, Zeyan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c466t-74470dfe27ef9ff117a957a1d8cac7aec1787eb43d06b71705cb2ba377584dfe3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>C. equisetifolia</topic><topic>continuous planting</topic><topic>gene function</topic><topic>metagenome</topic><topic>nutrient transformation</topic><topic>Plant Science</topic><topic>soil enzymes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Yuhua</creatorcontrib><creatorcontrib>Lin, Shaoxiong</creatorcontrib><creatorcontrib>Li, Jianjuan</creatorcontrib><creatorcontrib>Jia, Xiaoli</creatorcontrib><creatorcontrib>Hu, Mingyue</creatorcontrib><creatorcontrib>Cai, Yuhong</creatorcontrib><creatorcontrib>Cheng, Pengyuan</creatorcontrib><creatorcontrib>Li, Mingzhe</creatorcontrib><creatorcontrib>Chen, Yiling</creatorcontrib><creatorcontrib>Lin, Wenxiong</creatorcontrib><creatorcontrib>Wang, Haibin</creatorcontrib><creatorcontrib>Wu, Zeyan</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Frontiers in plant science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Yuhua</au><au>Lin, Shaoxiong</au><au>Li, Jianjuan</au><au>Jia, Xiaoli</au><au>Hu, Mingyue</au><au>Cai, Yuhong</au><au>Cheng, Pengyuan</au><au>Li, Mingzhe</au><au>Chen, Yiling</au><au>Lin, Wenxiong</au><au>Wang, Haibin</au><au>Wu, Zeyan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation</atitle><jtitle>Frontiers in plant science</jtitle><addtitle>Front Plant Sci</addtitle><date>2023-12-06</date><risdate>2023</risdate><volume>14</volume><spage>1324184</spage><epage>1324184</epage><pages>1324184-1324184</pages><issn>1664-462X</issn><eissn>1664-462X</eissn><abstract>(
) is an economically important forest tree species, often cultivated in continuous monoculture as a coastal protection forest. Continuous planting has gradually affected growth and severely restricted the sustainable development of the
industry. In this study, we analyzed the effects of continuous planting on
growth and explored the rhizosphere soil microecological mechanism from a metagenomic perspective. The results showed that continuous planting resulted in dwarfing, shorter root length, and reduced
seedling root system. Metagenomics analysis showed that 10 key characteristic microorganisms, mainly
,
, and
, were responsible for continuously planted
trees. Quantitative analysis showed that the number of microorganisms in these three genera decreased significantly with the increase of continuous planting. Gene function analysis showed that continuous planting led to the weakening of the environmental information processing-signal transduction ability of soil characteristic microorganisms, and the decrease of
trees against stress. Reduced capacity for metabolism, genetic information processing-replication and repair resulted in reduced microbial propagation and reduced microbial quantity in the rhizosphere soil of
trees. Secondly, amino acid metabolism, carbohydrate metabolism, glycan biosynthesis and metabolism, lipid metabolism, metabolism of cofactors and vitamins were all significantly reduced, resulting in a decrease in the ability of the soil to synthesize and metabolize carbon and nitrogen. These reduced capacities further led to reduced soil microbial quantity, microbial carbon and nitrogen, microbial respiration intensity, reduced soil enzyme nutrient cycling and resistance-related enzyme activities, a significant reduction in available nutrient content of rhizosphere soils, a reduction in the ion exchange capacity, and an impediment to
growth. This study provides an important basis for the management of continuously planted
plantations.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>38126014</pmid><doi>10.3389/fpls.2023.1324184</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | C. equisetifolia continuous planting gene function metagenome nutrient transformation Plant Science soil enzymes |
title | Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation |
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