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Characterization and Molecular Dynamics Simulation of a Lipase Capable of Improving the Functional Characteristics of an Egg-Yolk-Contaminated Liquid Egg White
Lipase has great application potential in hydrolyzing residual yolk lipid in egg white liquid to restore its functional properties. In this study, a lipase gene from Bacillus subtilis was expressed in E. coli BL21 (DE3) and named Lip-IM. Results showed that although Lip-IM has stronger specificity f...
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Published in: | Foods 2023-11, Vol.12 (22), p.4098 |
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description | Lipase has great application potential in hydrolyzing residual yolk lipid in egg white liquid to restore its functional properties. In this study, a lipase gene from Bacillus subtilis was expressed in E. coli BL21 (DE3) and named Lip-IM. Results showed that although Lip-IM has stronger specificity for medium- and short-chain substrates than long-chain substrates (C16, C18), due to its excellent enzyme activity, it also has strong hydrolysis activity for long-chain substrates and maintained over 80% activity at 4–20 °C, but significantly reduced when the temperature exceeds 40 °C. The addition of 0.5% Lip-IM enhanced foaming ability by 26% (from 475 to 501%) and reduced liquid precipitation rate by 9% (from 57 to 48%). Furthermore, molecular dynamics (MD) simulations were run to investigate the conformational stability of Lip-IM at different temperatures. Results showed that Lip-IM maintained a stable conformation within the temperature range of 277–303 K. Fluctuations in the flexible area and backbone movement of proteins were identified as the main reasons for its poor thermal stability. |
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In this study, a lipase gene from Bacillus subtilis was expressed in E. coli BL21 (DE3) and named Lip-IM. Results showed that although Lip-IM has stronger specificity for medium- and short-chain substrates than long-chain substrates (C16, C18), due to its excellent enzyme activity, it also has strong hydrolysis activity for long-chain substrates and maintained over 80% activity at 4–20 °C, but significantly reduced when the temperature exceeds 40 °C. The addition of 0.5% Lip-IM enhanced foaming ability by 26% (from 475 to 501%) and reduced liquid precipitation rate by 9% (from 57 to 48%). Furthermore, molecular dynamics (MD) simulations were run to investigate the conformational stability of Lip-IM at different temperatures. Results showed that Lip-IM maintained a stable conformation within the temperature range of 277–303 K. Fluctuations in the flexible area and backbone movement of proteins were identified as the main reasons for its poor thermal stability.</description><identifier>ISSN: 2304-8158</identifier><identifier>EISSN: 2304-8158</identifier><identifier>DOI: 10.3390/foods12224098</identifier><language>eng</language><publisher>Basel: MDPI AG</publisher><subject>Albumen ; Amino acids ; Bacteria ; Baked goods ; Conformation ; Contamination ; dynamic cross-correlation analysis ; Dynamic stability ; E coli ; Enzymatic activity ; Enzyme activity ; Enzymes ; Ethylenediaminetetraacetic acid ; Foaming ; foaming property ; Hydrolysis ; Lipase ; Lipids ; Molecular chains ; Molecular dynamics ; molecular dynamics simulation ; Molecular weight ; Particle size ; Precipitation rate ; Proteins ; Simulation methods ; Substrates ; Temperature ; Thermal stability ; Triglycerides</subject><ispartof>Foods, 2023-11, Vol.12 (22), p.4098</ispartof><rights>COPYRIGHT 2023 MDPI AG</rights><rights>2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c426t-12be550caefd004e132974a9e38164c3aea4e972a23d34d97b99a7e5776182893</cites><orcidid>0000-0001-9898-1238</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2893042375/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2893042375?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>314,778,782,25740,27911,27912,36999,37000,44577,74883</link.rule.ids></links><search><creatorcontrib>Xu, Linlin</creatorcontrib><creatorcontrib>Pan, Fei</creatorcontrib><creatorcontrib>Li, Yingnan</creatorcontrib><creatorcontrib>Liu, Huiqian</creatorcontrib><creatorcontrib>Wang, Chengtao</creatorcontrib><title>Characterization and Molecular Dynamics Simulation of a Lipase Capable of Improving the Functional Characteristics of an Egg-Yolk-Contaminated Liquid Egg White</title><title>Foods</title><description>Lipase has great application potential in hydrolyzing residual yolk lipid in egg white liquid to restore its functional properties. In this study, a lipase gene from Bacillus subtilis was expressed in E. coli BL21 (DE3) and named Lip-IM. Results showed that although Lip-IM has stronger specificity for medium- and short-chain substrates than long-chain substrates (C16, C18), due to its excellent enzyme activity, it also has strong hydrolysis activity for long-chain substrates and maintained over 80% activity at 4–20 °C, but significantly reduced when the temperature exceeds 40 °C. The addition of 0.5% Lip-IM enhanced foaming ability by 26% (from 475 to 501%) and reduced liquid precipitation rate by 9% (from 57 to 48%). Furthermore, molecular dynamics (MD) simulations were run to investigate the conformational stability of Lip-IM at different temperatures. Results showed that Lip-IM maintained a stable conformation within the temperature range of 277–303 K. Fluctuations in the flexible area and backbone movement of proteins were identified as the main reasons for its poor thermal stability.</description><subject>Albumen</subject><subject>Amino acids</subject><subject>Bacteria</subject><subject>Baked goods</subject><subject>Conformation</subject><subject>Contamination</subject><subject>dynamic cross-correlation analysis</subject><subject>Dynamic stability</subject><subject>E coli</subject><subject>Enzymatic activity</subject><subject>Enzyme activity</subject><subject>Enzymes</subject><subject>Ethylenediaminetetraacetic acid</subject><subject>Foaming</subject><subject>foaming property</subject><subject>Hydrolysis</subject><subject>Lipase</subject><subject>Lipids</subject><subject>Molecular chains</subject><subject>Molecular dynamics</subject><subject>molecular dynamics simulation</subject><subject>Molecular weight</subject><subject>Particle size</subject><subject>Precipitation rate</subject><subject>Proteins</subject><subject>Simulation methods</subject><subject>Substrates</subject><subject>Temperature</subject><subject>Thermal stability</subject><subject>Triglycerides</subject><issn>2304-8158</issn><issn>2304-8158</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNptkk1v1DAQhiMEElXpkbslLlxS_JV1fKyWFlZaxAEQ4hRN4nHWS2Jv7aRS-TP9q3W6iFKEfbD1-pl37PEUxWtGz4XQ9J0NwSTGOZdU18-KEy6oLGtW1c__2r8szlLa0zw0E7XgJ8XdegcRugmj-wWTC56AN-RTGLCbB4jk_a2H0XWJfHFjFh6IYAmQrTtAQrKGA7QDLtpmPMRw43xPph2Sq9l3Cw0DeUyRpsVqiffksu_LH2H4Wa6Dn3IODxOabHs9O7Mcku87N-Gr4oWFIeHZ7_W0-HZ1-XX9sdx-_rBZX2zLTvLVVDLeYlXRDtAaSiUywbWSoFHUbCU7AQgSteLAhRHSaNVqDQorpVas5rUWp8Xm6GsC7JtDdCPE2yaAax6EEPsGYr79gE1LtW41k8YKKxWswGKN0ipBlaxYZ7LX26NXrsf1jGlqRpc6HAbwGObULPlqUdWSZvTNP-g-zDEX7UhRyYWqHqkecn7nbZhyQRfT5kIpKTjlTGXq_D9UngbzDwaP1mX9SUB5DOhiSCmi_fNuRpulqZonTSXuAQiHvws</recordid><startdate>20231101</startdate><enddate>20231101</enddate><creator>Xu, Linlin</creator><creator>Pan, Fei</creator><creator>Li, Yingnan</creator><creator>Liu, Huiqian</creator><creator>Wang, Chengtao</creator><general>MDPI AG</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QR</scope><scope>7T7</scope><scope>7X2</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>HCIFZ</scope><scope>M0K</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0001-9898-1238</orcidid></search><sort><creationdate>20231101</creationdate><title>Characterization and Molecular Dynamics Simulation of a Lipase Capable of Improving the Functional Characteristics of an Egg-Yolk-Contaminated Liquid Egg White</title><author>Xu, Linlin ; Pan, Fei ; Li, Yingnan ; Liu, Huiqian ; Wang, Chengtao</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c426t-12be550caefd004e132974a9e38164c3aea4e972a23d34d97b99a7e5776182893</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Albumen</topic><topic>Amino acids</topic><topic>Bacteria</topic><topic>Baked goods</topic><topic>Conformation</topic><topic>Contamination</topic><topic>dynamic cross-correlation analysis</topic><topic>Dynamic stability</topic><topic>E coli</topic><topic>Enzymatic activity</topic><topic>Enzyme activity</topic><topic>Enzymes</topic><topic>Ethylenediaminetetraacetic acid</topic><topic>Foaming</topic><topic>foaming property</topic><topic>Hydrolysis</topic><topic>Lipase</topic><topic>Lipids</topic><topic>Molecular chains</topic><topic>Molecular dynamics</topic><topic>molecular dynamics simulation</topic><topic>Molecular weight</topic><topic>Particle size</topic><topic>Precipitation rate</topic><topic>Proteins</topic><topic>Simulation methods</topic><topic>Substrates</topic><topic>Temperature</topic><topic>Thermal stability</topic><topic>Triglycerides</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xu, Linlin</creatorcontrib><creatorcontrib>Pan, Fei</creatorcontrib><creatorcontrib>Li, Yingnan</creatorcontrib><creatorcontrib>Liu, Huiqian</creatorcontrib><creatorcontrib>Wang, Chengtao</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Chemoreception Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Agricultural Science Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>SciTech Premium Collection</collection><collection>Agriculture Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><collection>Directory of Open Access Journals(OpenAccess)</collection><jtitle>Foods</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xu, Linlin</au><au>Pan, Fei</au><au>Li, Yingnan</au><au>Liu, Huiqian</au><au>Wang, Chengtao</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization and Molecular Dynamics Simulation of a Lipase Capable of Improving the Functional Characteristics of an Egg-Yolk-Contaminated Liquid Egg White</atitle><jtitle>Foods</jtitle><date>2023-11-01</date><risdate>2023</risdate><volume>12</volume><issue>22</issue><spage>4098</spage><pages>4098-</pages><issn>2304-8158</issn><eissn>2304-8158</eissn><abstract>Lipase has great application potential in hydrolyzing residual yolk lipid in egg white liquid to restore its functional properties. In this study, a lipase gene from Bacillus subtilis was expressed in E. coli BL21 (DE3) and named Lip-IM. Results showed that although Lip-IM has stronger specificity for medium- and short-chain substrates than long-chain substrates (C16, C18), due to its excellent enzyme activity, it also has strong hydrolysis activity for long-chain substrates and maintained over 80% activity at 4–20 °C, but significantly reduced when the temperature exceeds 40 °C. The addition of 0.5% Lip-IM enhanced foaming ability by 26% (from 475 to 501%) and reduced liquid precipitation rate by 9% (from 57 to 48%). Furthermore, molecular dynamics (MD) simulations were run to investigate the conformational stability of Lip-IM at different temperatures. Results showed that Lip-IM maintained a stable conformation within the temperature range of 277–303 K. Fluctuations in the flexible area and backbone movement of proteins were identified as the main reasons for its poor thermal stability.</abstract><cop>Basel</cop><pub>MDPI AG</pub><doi>10.3390/foods12224098</doi><orcidid>https://orcid.org/0000-0001-9898-1238</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Albumen Amino acids Bacteria Baked goods Conformation Contamination dynamic cross-correlation analysis Dynamic stability E coli Enzymatic activity Enzyme activity Enzymes Ethylenediaminetetraacetic acid Foaming foaming property Hydrolysis Lipase Lipids Molecular chains Molecular dynamics molecular dynamics simulation Molecular weight Particle size Precipitation rate Proteins Simulation methods Substrates Temperature Thermal stability Triglycerides |
title | Characterization and Molecular Dynamics Simulation of a Lipase Capable of Improving the Functional Characteristics of an Egg-Yolk-Contaminated Liquid Egg White |
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