Evaluating the Cysteine-Rich and Catalytic Subdomains of Human Tyrosinase and OCA1-Related Mutants Using 1 μs Molecular Dynamics Simulation

• Published in: International journal of molecular sciences 2023-09, Vol.24 (17), p.13032
• Main Authors: Woods, Taariq, Sergeev, Yuri V
• Format: Article
• Language: English
• Subjects: Albinism; Cysteine; cysteine-rich and tyrosinase subdomains; Denaturation; Enzymes; Genes; Genetic aspects; homology model; human tyrosinase; Hydrogen; Molecular dynamics; molecular dynamics simulation of protein urea unfolding; molten globule; Mutation; OCA1; Proteins; Thiols; Urea
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms241713032

The inherited disorder oculocutaneous albinism type 1 (OCA1) is caused by mutations in the TYR gene encoding tyrosinase (Tyr), an enzyme essential to producing pigments throughout the human body. The intramelanosomal domain of Tyr consists of the cysteine-rich and tyrosinase catalytic subdomains, which are essential for enzymatic activity. In protein unfolding, the roles of these subdomains are not well established. Here, we performed six molecular dynamics simulations at room temperature for Tyr and OCA1-related mutant variants P406L and R402Q intramelanosomal domains. The proteins were simulated for 1 μs in water and urea to induce unfolding. In urea, we observed increases in surface area, decreases in intramolecular hydrogen bonding, and decreases in hydrophobic interactions, suggesting a ‘molten globule’ state for each protein. Between all conditions, the cysteine-rich subdomain remains stable, whereas the catalytic subdomain shows increased flexibility. This flexibility is intensified by the P406L mutation, while R402Q increases the catalytic domain’s rigidity. The cysteine-rich subdomain is rigid, preventing the protein from unfolding, whereas the flexibility of the catalytic subdomain accommodates mutational changes that could inhibit activity. These findings match the conclusions from our experimental work suggesting the function alteration by the P406L mutation, and the potential role of R402Q as a polymorphism.