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Investigating the genetic basis of salt-tolerance in common bean: a genome-wide association study at the early vegetative stage

Salinity poses a significant challenge to global crop productivity, affecting approximately 20% of cultivated and 33% of irrigated farmland, and this issue is on the rise. Negative impact of salinity on plant development and metabolism leads to physiological and morphological alterations mainly due...

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Published in:Scientific reports 2024-03, Vol.14 (1), p.5315-5315, Article 5315
Main Authors: Raggi, Lorenzo, Caproni, Leonardo, Ciancaleoni, Simona, D’Amato, Roberto, Businelli, Daniela, Negri, Valeria
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description Salinity poses a significant challenge to global crop productivity, affecting approximately 20% of cultivated and 33% of irrigated farmland, and this issue is on the rise. Negative impact of salinity on plant development and metabolism leads to physiological and morphological alterations mainly due to high ion concentration in tissues and the reduced water and nutrients uptake. Common bean ( Phaseolus vulgaris L.), a staple food crop accounting for a substantial portion of consumed grain legumes worldwide, is highly susceptible to salt stress resulting in noticeable reduction in dry matter gain in roots and shoots even at low salt concentrations. In this study we screened a common bean panel of diversity encompassing 192 homozygous genotypes for salt tolerance at seedling stage. Phenotypic data were leveraged to identify genomic regions involved in salt stress tolerance in the species through GWAS. We detected seven significant associations between shoot dry weight and SNP markers. The candidate genes, in linkage with the regions associated to salt tolerance or harbouring the detected SNP, showed strong homology with genes known to be involved in salt tolerance in Arabidopsis. Our findings provide valuable insights onto the genetic control of salt tolerance in common bean and represent a first contribution to address the challenge of salinity-induced yield losses in this species and poses the ground to eventually breed salt tolerant common bean varieties.
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subjects 631/208/205
631/208/480
631/208/711
631/208/8
Abiotic stress
Agricultural land
Arabidopsis
Beans
Crop production
Dry matter
Genetic control
Genome-wide association studies
Genome-Wide Association Study
Genotypes
Homology
Humanities and Social Sciences
Irrigated farming
Legumes
multidisciplinary
Nutrient uptake
Phaseolus - genetics
Phaseolus vulgaris
Plant Breeding
Salinity
Salinity effects
Salinity tolerance
Salt tolerance
Salt Tolerance - genetics
Science
Science (multidisciplinary)
Seedlings
Single-nucleotide polymorphism
Vegetables
title Investigating the genetic basis of salt-tolerance in common bean: a genome-wide association study at the early vegetative stage
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