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Investigating the genetic basis of salt-tolerance in common bean: a genome-wide association study at the early vegetative stage
Salinity poses a significant challenge to global crop productivity, affecting approximately 20% of cultivated and 33% of irrigated farmland, and this issue is on the rise. Negative impact of salinity on plant development and metabolism leads to physiological and morphological alterations mainly due...
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Published in: | Scientific reports 2024-03, Vol.14 (1), p.5315-5315, Article 5315 |
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description | Salinity poses a significant challenge to global crop productivity, affecting approximately 20% of cultivated and 33% of irrigated farmland, and this issue is on the rise. Negative impact of salinity on plant development and metabolism leads to physiological and morphological alterations mainly due to high ion concentration in tissues and the reduced water and nutrients uptake. Common bean (
Phaseolus vulgaris
L.), a staple food crop accounting for a substantial portion of consumed grain legumes worldwide, is highly susceptible to salt stress resulting in noticeable reduction in dry matter gain in roots and shoots even at low salt concentrations. In this study we screened a common bean panel of diversity encompassing 192 homozygous genotypes for salt tolerance at seedling stage. Phenotypic data were leveraged to identify genomic regions involved in salt stress tolerance in the species through GWAS. We detected seven significant associations between shoot dry weight and SNP markers. The candidate genes, in linkage with the regions associated to salt tolerance or harbouring the detected SNP, showed strong homology with genes known to be involved in salt tolerance in Arabidopsis. Our findings provide valuable insights onto the genetic control of salt tolerance in common bean and represent a first contribution to address the challenge of salinity-induced yield losses in this species and poses the ground to eventually breed salt tolerant common bean varieties. |
doi_str_mv | 10.1038/s41598-024-55403-z |
format | article |
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Phaseolus vulgaris
L.), a staple food crop accounting for a substantial portion of consumed grain legumes worldwide, is highly susceptible to salt stress resulting in noticeable reduction in dry matter gain in roots and shoots even at low salt concentrations. In this study we screened a common bean panel of diversity encompassing 192 homozygous genotypes for salt tolerance at seedling stage. Phenotypic data were leveraged to identify genomic regions involved in salt stress tolerance in the species through GWAS. We detected seven significant associations between shoot dry weight and SNP markers. The candidate genes, in linkage with the regions associated to salt tolerance or harbouring the detected SNP, showed strong homology with genes known to be involved in salt tolerance in Arabidopsis. Our findings provide valuable insights onto the genetic control of salt tolerance in common bean and represent a first contribution to address the challenge of salinity-induced yield losses in this species and poses the ground to eventually breed salt tolerant common bean varieties.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-024-55403-z</identifier><identifier>PMID: 38438439</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/208/205 ; 631/208/480 ; 631/208/711 ; 631/208/8 ; Abiotic stress ; Agricultural land ; Arabidopsis ; Beans ; Crop production ; Dry matter ; Genetic control ; Genome-wide association studies ; Genome-Wide Association Study ; Genotypes ; Homology ; Humanities and Social Sciences ; Irrigated farming ; Legumes ; multidisciplinary ; Nutrient uptake ; Phaseolus - genetics ; Phaseolus vulgaris ; Plant Breeding ; Salinity ; Salinity effects ; Salinity tolerance ; Salt tolerance ; Salt Tolerance - genetics ; Science ; Science (multidisciplinary) ; Seedlings ; Single-nucleotide polymorphism ; Vegetables</subject><ispartof>Scientific reports, 2024-03, Vol.14 (1), p.5315-5315, Article 5315</ispartof><rights>The Author(s) 2024</rights><rights>2024. The Author(s).</rights><rights>The Author(s) 2024. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c541t-bb90a2f5ce9ef996d4f21ffe321a82930dfdba155d4aa6cff35794ee503871d33</citedby><cites>FETCH-LOGICAL-c541t-bb90a2f5ce9ef996d4f21ffe321a82930dfdba155d4aa6cff35794ee503871d33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2937177632/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2937177632?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,882,25734,27905,27906,36993,36994,44571,53772,53774,74875</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38438439$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Raggi, Lorenzo</creatorcontrib><creatorcontrib>Caproni, Leonardo</creatorcontrib><creatorcontrib>Ciancaleoni, Simona</creatorcontrib><creatorcontrib>D’Amato, Roberto</creatorcontrib><creatorcontrib>Businelli, Daniela</creatorcontrib><creatorcontrib>Negri, Valeria</creatorcontrib><title>Investigating the genetic basis of salt-tolerance in common bean: a genome-wide association study at the early vegetative stage</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Salinity poses a significant challenge to global crop productivity, affecting approximately 20% of cultivated and 33% of irrigated farmland, and this issue is on the rise. Negative impact of salinity on plant development and metabolism leads to physiological and morphological alterations mainly due to high ion concentration in tissues and the reduced water and nutrients uptake. Common bean (
Phaseolus vulgaris
L.), a staple food crop accounting for a substantial portion of consumed grain legumes worldwide, is highly susceptible to salt stress resulting in noticeable reduction in dry matter gain in roots and shoots even at low salt concentrations. In this study we screened a common bean panel of diversity encompassing 192 homozygous genotypes for salt tolerance at seedling stage. Phenotypic data were leveraged to identify genomic regions involved in salt stress tolerance in the species through GWAS. We detected seven significant associations between shoot dry weight and SNP markers. The candidate genes, in linkage with the regions associated to salt tolerance or harbouring the detected SNP, showed strong homology with genes known to be involved in salt tolerance in Arabidopsis. 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Raggi, Lorenzo</au><au>Caproni, Leonardo</au><au>Ciancaleoni, Simona</au><au>D’Amato, Roberto</au><au>Businelli, Daniela</au><au>Negri, Valeria</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Investigating the genetic basis of salt-tolerance in common bean: a genome-wide association study at the early vegetative stage</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2024-03-04</date><risdate>2024</risdate><volume>14</volume><issue>1</issue><spage>5315</spage><epage>5315</epage><pages>5315-5315</pages><artnum>5315</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Salinity poses a significant challenge to global crop productivity, affecting approximately 20% of cultivated and 33% of irrigated farmland, and this issue is on the rise. Negative impact of salinity on plant development and metabolism leads to physiological and morphological alterations mainly due to high ion concentration in tissues and the reduced water and nutrients uptake. Common bean (
Phaseolus vulgaris
L.), a staple food crop accounting for a substantial portion of consumed grain legumes worldwide, is highly susceptible to salt stress resulting in noticeable reduction in dry matter gain in roots and shoots even at low salt concentrations. In this study we screened a common bean panel of diversity encompassing 192 homozygous genotypes for salt tolerance at seedling stage. Phenotypic data were leveraged to identify genomic regions involved in salt stress tolerance in the species through GWAS. We detected seven significant associations between shoot dry weight and SNP markers. The candidate genes, in linkage with the regions associated to salt tolerance or harbouring the detected SNP, showed strong homology with genes known to be involved in salt tolerance in Arabidopsis. Our findings provide valuable insights onto the genetic control of salt tolerance in common bean and represent a first contribution to address the challenge of salinity-induced yield losses in this species and poses the ground to eventually breed salt tolerant common bean varieties.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>38438439</pmid><doi>10.1038/s41598-024-55403-z</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 631/208/205 631/208/480 631/208/711 631/208/8 Abiotic stress Agricultural land Arabidopsis Beans Crop production Dry matter Genetic control Genome-wide association studies Genome-Wide Association Study Genotypes Homology Humanities and Social Sciences Irrigated farming Legumes multidisciplinary Nutrient uptake Phaseolus - genetics Phaseolus vulgaris Plant Breeding Salinity Salinity effects Salinity tolerance Salt tolerance Salt Tolerance - genetics Science Science (multidisciplinary) Seedlings Single-nucleotide polymorphism Vegetables |
title | Investigating the genetic basis of salt-tolerance in common bean: a genome-wide association study at the early vegetative stage |
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